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fix configure
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@Zilong-Li
Zilong-Li committed Dec 21, 2024
1 parent 64b9ae7 commit 221f037
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Showing 2 changed files with 2 additions and 6 deletions.
4 changes: 1 addition & 3 deletions configure
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Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,7 @@ set -e
HTSLIB_DIR="src/htslib-1.21"
echo "Configuring HTSlib in $HTSLIB_DIR"
cd $HTSLIB_DIR
./configure \
CFLAGS="-O2 -fPIC" \
LDFLAGS=$(${R_HOME}/bin/R CMD config LDFLAG)
./configure CFLAGS="-O2 -fPIC"

make libhts.a

4 changes: 1 addition & 3 deletions configure.win
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Original file line number Diff line number Diff line change
Expand Up @@ -5,9 +5,7 @@ echo "Configuring HTSlib in $HTSLIB_DIR"
cd $HTSLIB_DIR
## fix symbolic linking error
cp htscodecs_bundled.mk htscodecs.mk
./configure \
CFLAGS="-O2 -fPIC" \
LDFLAGS=$(${R_HOME}/bin/R CMD config LDFLAG)
./configure CFLAGS="-O2 -fPIC"

make libhts.a

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