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Fix ml dataset #232

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Fix ml dataset #232

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kamurani
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@kamurani kamurani commented Nov 5, 2022

Fixed some issues in the ProteinGraphDataset class, such as

  • checking for bad uniprot IDs for alphafold structure download (believe this was also fixed by @a-r-j in another func with try: except ?)
  • check that graph construction succeeded, otherwise None object will be passed to convertor function and create ValueError
  • fixed up indexing in distance.py (this was from a while back, not sure if it's been fixed elsewhere already)

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sonarqubecloud bot commented Nov 9, 2022

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 2 Code Smells

No Coverage information No Coverage information
6.1% 6.1% Duplication

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@kamurani @a-r-j