test python version #21

	name: Test for python versions

	on: [push, pull_request]

	jobs:
	build:
	runs-on: ubuntu-latest

	strategy:
	matrix:
	python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	pip install -r requirements.txt
	pip install .
	pip install pytest

	- name: Install `gcsfuse`
	run: \|
	echo "deb http://packages.cloud.google.com/apt gcsfuse-$(lsb_release -c -s) main" \| sudo tee /etc/apt/sources.list.d/gcsfuse.list
	curl -fsSL https://packages.cloud.google.com/apt/doc/apt-key.gpg \| gpg --dearmor -o /tmp/packages-cloud-google-com-apt-keyring.gpg
	sudo mv /tmp/packages-cloud-google-com-apt-keyring.gpg /etc/apt/trusted.gpg.d/
	sudo apt-get update
	sudo apt-get install gcsfuse -y

	- name: Mount Google Cloud Storage bucket
	run: \|
	sudo mkdir -p /mnt/gcs-bucket
	sudo chown $USER:$USER /mnt/gcs-bucket
	gcsfuse --implicit-dirs --anonymous-access --only-dir platinum-genomes genomics-public-data /mnt/gcs-bucket

	- name: List bucket contents
	run: ls /mnt/gcs-bucket

	- name: Download pytor file
	run: \|
	wget https://storage.googleapis.com/cnvpytor_data/HepG2_WGS.pytor

	- name: check cnvpytor
	run: \|
	cnvpytor -h

	- name: run cnvpytor
	run: \|
	cnvpytor -root test.pytor -rd /mnt/gcs-bucket/bam/NA12877_S1.bam -v d

	- name: Run tests
	run: \|
	pytest -s

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