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Merge branch 'nf-core:master' into master #46

Merge branch 'nf-core:master' into master

Merge branch 'nf-core:master' into master #46

Triggered via push September 21, 2023 11:07
Status Cancelled
Total duration 3m 53s
Artifacts

test.yml

on: push
pytest-changes
5s
pytest-changes
nf-test-changes
8s
nf-test-changes
Matrix: nf-core-lint
Matrix: pytest
Waiting for pending jobs
Matrix: nf-test
confirm-pass
2s
confirm-pass
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73 errors
nf-core-lint (subworkflows/initialise)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (subworkflows/fastq_align_bwa)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (taxpasta/merge)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (taxpasta/standardise)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (subworkflows/fastq_trim_fastp_fastqc)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (subworkflows/bam_ngscheckmate)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (shinyngs/validatefomcomponents)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (subworkflows/bam_ngscheckmate)
The operation was canceled.
nf-core-lint (shinyngs/validatefomcomponents)
The operation was canceled.
nf-core-lint (gatk4/splitcram)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/splitcram)
The operation was canceled.
nf-core-lint (gatk4/splitncigarreads)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/splitncigarreads)
The operation was canceled.
nf-core-lint (gatk4/splitintervals)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/splitintervals)
The operation was canceled.
nf-core-lint (gtdbtk/classifywf)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gtdbtk/classifywf)
The operation was canceled.
nf-core-lint (shinyngs/staticexploratory)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (shinyngs/staticexploratory)
The operation was canceled.
nf-core-lint (learnmsa/align)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (learnmsa/align)
The operation was canceled.
nf-core-lint (gatk4/svannotate)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/svannotate)
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nf-core-lint (gatk4/variantrecalibrator)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/variantrecalibrator)
The operation was canceled.
nf-core-lint (gatk4/samtofastq)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/samtofastq)
The operation was canceled.
nf-core-lint (kalign/align)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (kalign/align)
The operation was canceled.
nf-core-lint (gatk4/variantfiltration)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/variantfiltration)
The operation was canceled.
nf-core-lint (seqtk/seq)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (seqtk/seq)
The operation was canceled.
nf-core-lint (lofreq/callparallel)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (lofreq/callparallel)
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nf-core-lint (shinyngs/app)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (shinyngs/app)
The operation was canceled.
nf-core-lint (lofreq/call)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (lofreq/call)
The operation was canceled.
nf-core-lint (mitohifi/mitohifi)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (mitohifi/mitohifi)
The operation was canceled.
nf-core-lint (gatk4/svcluster)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/svcluster)
The operation was canceled.
nf-core-lint (ngscheckmate/ncm)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (ngscheckmate/ncm)
The operation was canceled.
nf-core-lint (gatk4/shiftfasta)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (gatk4/shiftfasta)
The operation was canceled.
nf-core-lint (metaphlan/mergemetaphlantables)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (metaphlan/mergemetaphlantables)
The operation was canceled.
nf-core-lint (shinyngs/staticdifferential)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (shinyngs/staticdifferential)
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nf-core-lint (sentieon/dnascope)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (sentieon/dnascope)
The operation was canceled.
nf-core-lint (picard/markduplicates)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (picard/markduplicates)
The operation was canceled.
nf-core-lint (picard/addorreplacereadgroups)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (picard/addorreplacereadgroups)
The operation was canceled.
nf-core-lint (picard/fixmateinformation)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (picard/fixmateinformation)
The operation was canceled.
nf-core-lint (ngscheckmate/vafncm)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (ngscheckmate/vafncm)
The operation was canceled.
nf-core-lint (ngscheckmate/patterngenerator)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (ngscheckmate/patterngenerator)
The operation was canceled.
nf-core-lint (picard/cleansam)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (picard/cleansam)
The operation was canceled.
nf-core-lint (picard/filtersamreads)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (picard/filtersamreads)
The operation was canceled.
nf-core-lint (ngscheckmate/fastq)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (ngscheckmate/fastq)
The operation was canceled.
nf-core-lint (picard/sortsam)
Canceling since a higher priority waiting request for 'test-refs/heads/master' exists
nf-core-lint (picard/sortsam)
The operation was canceled.
confirm-pass
Process completed with exit code 1.
test
Strategy expansion exceeded 256 results for job 'pytest'