Skip to content
test

update umicollapse from process_medium to process_high (#3856) #49

Sign in to view logs

update umicollapse from process_medium to process_high (#3856)

update umicollapse from process_medium to process_high (#3856) #49

Triggered via push October 6, 2023 09:24
@adamrtalbotadamrtalbot
pushed 66a26c7
master
Status Failure
Total duration 1h 46m 0s
Artifacts –

test.yml

on: push
pytest-changes
5s
pytest-changes
nf-test-changes
4s
nf-test-changes
prettier
27s
prettier
editorconfig
15s
editorconfig
Matrix: nf-core-lint
Matrix: pytest
Matrix: nf-test
confirm-pass
2s
confirm-pass
Fit to window
Zoom out
Zoom in

Annotations

323 errors and 286 warnings
pytest (glimpse2/splitreference, singularity)
Process completed with exit code 1.
pytest (glimpse2/splitreference, singularity)
API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 4040:908A:4772:932B:651FD4B7.
pytest (manta/somatic, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 0BC0:38BA:B4C3:176F4:651FD511.
pytest (manta/somatic, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/somatic, conda)
Invalid URL
pytest (manta/somatic, conda)
Process completed with exit code 1.
pytest (krakenuniq/preloadedkrakenuniq, docker)
Process completed with exit code 1.
pytest (krakenuniq/preloadedkrakenuniq, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8C10:1E42:72853F:EB221E:651FD4F3.
pytest (krakenuniq/preloadedkrakenuniq, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/preloadedkrakenuniq, docker)
Invalid URL
pytest (mmseqs/cluster, singularity)
Process completed with exit code 1.
pytest (mmseqs/cluster, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 34C0:2F92:6CBD93:DE6673:651FD55A.
pytest (mmseqs/cluster, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (mmseqs/cluster, singularity)
Invalid URL
pytest (krakenuniq/build, singularity)
Process completed with exit code 1.
pytest (krakenuniq/build, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 1900:65A9:82DC34:10C12C7:651FD4D4.
pytest (krakenuniq/build, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/build, singularity)
Invalid URL
pytest (hypo, conda)
Process completed with exit code 1.
pytest (hypo, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 1406:1C68:94DC07:12F78E0:651FD4B5.
pytest (hypo, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (hypo, conda)
Invalid URL
pytest (krakenuniq/download, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6000:4DFC:864D32:11254D5:651FD4DB.
pytest (krakenuniq/download, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/download, singularity)
Invalid URL
pytest (krakenuniq/download, singularity)
Process completed with exit code 1.
pytest (krakenuniq/build, docker)
Process completed with exit code 1.
pytest (krakenuniq/build, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8380:516A:7FE6:10983:651FD4D3.
pytest (krakenuniq/build, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/build, docker)
Invalid URL
pytest (krakenuniq/build, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5400:660F:69693E:D7E015:651FD4CE.
pytest (krakenuniq/build, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/build, conda)
Invalid URL
pytest (krakenuniq/build, conda)
Process completed with exit code 1.
pytest (krakenuniq/download, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 13C0:8B05:6A4148:D972D7:651FD4D7.
pytest (krakenuniq/download, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/download, conda)
Invalid URL
pytest (krakenuniq/download, conda)
Process completed with exit code 1.
pytest (krakenuniq/preloadedkrakenuniq, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 9580:2E67:67D608:D4A614:651FD4E0.
pytest (krakenuniq/preloadedkrakenuniq, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/preloadedkrakenuniq, singularity)
Invalid URL
pytest (krakenuniq/preloadedkrakenuniq, singularity)
Process completed with exit code 1.
pytest (krakenuniq/preloadedkrakenuniq, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 1028:516A:9CB3:14543:651FD4F2.
pytest (krakenuniq/preloadedkrakenuniq, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/preloadedkrakenuniq, conda)
Invalid URL
pytest (krakenuniq/preloadedkrakenuniq, conda)
Process completed with exit code 1.
pytest (hypo, singularity)
Process completed with exit code 1.
pytest (hypo, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6800:881E:686A0C:6C4616:651FD4C2.
pytest (hypo, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (hypo, singularity)
Invalid URL
pytest (nonpareil, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6400:255E:69B7AD:D85BF4:651FD587.
pytest (nonpareil, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (nonpareil, conda)
Invalid URL
pytest (nonpareil, conda)
Process completed with exit code 1.
pytest (manta/tumoronly, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 7600:686B:73F3E8:EE0357:651FD52C.
pytest (manta/tumoronly, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/tumoronly, singularity)
Invalid URL
pytest (manta/tumoronly, singularity)
Process completed with exit code 1.
pytest (manta/somatic, singularity)
Process completed with exit code 1.
pytest (manta/somatic, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 9040:9323:68F5F7:D6D9B0:651FD519.
pytest (manta/somatic, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/somatic, singularity)
Invalid URL
pytest (manta/germline, conda)
Process completed with exit code 1.
pytest (manta/germline, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6C30:6B3E:68B145:D66489:651FD50E.
pytest (manta/germline, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/germline, conda)
Invalid URL
pytest (multiqc, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5808:5D3D:714A87:E8AE82:651FD573.
pytest (multiqc, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (multiqc, conda)
Invalid URL
pytest (multiqc, conda)
Process completed with exit code 1.
pytest (manta/germline, singularity)
Process completed with exit code 1.
pytest (manta/germline, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3400:A65E2:4E065:6D7AA:651FD515.
pytest (manta/germline, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/germline, singularity)
Invalid URL
pytest (manta/tumoronly, docker)
Process completed with exit code 1.
pytest (manta/tumoronly, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID DC10:8B05:6AAC54:DA4CAA:651FD525.
pytest (manta/tumoronly, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/tumoronly, docker)
Invalid URL
pytest (krakenuniq/download, docker)
Process completed with exit code 1.
pytest (krakenuniq/download, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 2818:22AB:7C4384:FED8DA:651FD4E0.
pytest (krakenuniq/download, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (krakenuniq/download, docker)
Invalid URL
pytest (hypo, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 57C0:9A37:54EC37:58D514:651FD4BC.
pytest (hypo, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (hypo, docker)
Invalid URL
pytest (hypo, docker)
Process completed with exit code 1.
pytest (mmseqs/linclust, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3440:34DA:79793C:F8A2B9:651FD571.
pytest (mmseqs/linclust, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (mmseqs/linclust, singularity)
Invalid URL
pytest (mmseqs/linclust, singularity)
Process completed with exit code 1.
pytest (mmseqs/cluster, docker)
Process completed with exit code 1.
pytest (mmseqs/cluster, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID C680:395D:90B1:12CA7:651FD534.
pytest (mmseqs/cluster, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (mmseqs/cluster, docker)
Invalid URL
pytest (multiqc, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8FC0:3209:6E580F:E2D855:651FD5A2.
pytest (multiqc, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (multiqc, docker)
Invalid URL
pytest (multiqc, docker)
Process completed with exit code 1.
pytest (mmseqs/cluster, conda)
Process completed with exit code 1.
pytest (mmseqs/cluster, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5C00:2F92:6C7D26:DDE312:651FD532.
pytest (mmseqs/cluster, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (mmseqs/cluster, conda)
Invalid URL
pytest (manta/somatic, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID A3C0:5FAA:669B80:D202C0:651FD513.
pytest (manta/somatic, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/somatic, docker)
Invalid URL
pytest (manta/somatic, docker)
Process completed with exit code 1.
pytest (mmseqs/linclust, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 4A00:6552:11578:23C9F:651FD56A.
pytest (mmseqs/linclust, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (mmseqs/linclust, conda)
Invalid URL
pytest (mmseqs/linclust, conda)
Process completed with exit code 1.
pytest (manta/tumoronly, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5FC0:9419:5D2E08:610DDF:651FD525.
pytest (manta/tumoronly, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/tumoronly, conda)
Invalid URL
pytest (manta/tumoronly, conda)
Process completed with exit code 1.
pytest (mmseqs/linclust, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID D040:6920:6F609D:E4EC5C:651FD56A.
pytest (mmseqs/linclust, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (mmseqs/linclust, docker)
Invalid URL
pytest (mmseqs/linclust, docker)
Process completed with exit code 1.
pytest (nonpareil, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5040:2DAB:6560D5:CFAF4C:651FD60B.
pytest (nonpareil, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (nonpareil, docker)
Invalid URL
pytest (nonpareil, docker)
Process completed with exit code 1.
pytest (propr/logratio, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8808:3FC8:593D9B:5D3158:651FD67C.
pytest (propr/logratio, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (propr/logratio, conda)
Invalid URL
pytest (propr/logratio, conda)
Process completed with exit code 1.
pytest (nonpareil, singularity)
Process completed with exit code 1.
pytest (nonpareil, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 2FC0:49C4:6FC97E:E5B74D:651FD618.
pytest (nonpareil, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (nonpareil, singularity)
Invalid URL
pytest (manta/germline, docker)
Process completed with exit code 1.
pytest (manta/germline, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 4040:9323:68E0B8:D6AE6C:651FD50C.
pytest (manta/germline, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (manta/germline, docker)
Invalid URL
pytest (multiqc, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 2FC0:9306:5960BF:5D4BB3:651FD595.
pytest (multiqc, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (multiqc, singularity)
Invalid URL
pytest (multiqc, singularity)
Process completed with exit code 1.
pytest (propr/propd, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 73C0:4BF1:72EB18:EAA990:651FD702.
pytest (propr/propd, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (propr/propd, conda)
Invalid URL
pytest (propr/propd, conda)
Process completed with exit code 1.
pytest (pneumocat, singularity)
Process completed with exit code 1.
pytest (pneumocat, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 4BC0:104A:5B3D42:5F28ED:651FD650.
pytest (pneumocat, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (pneumocat, singularity)
Invalid URL
pytest (pneumocat, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID AF80:04E1:7B0F6A:FC0742:651FD647.
pytest (pneumocat, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (pneumocat, docker)
Invalid URL
pytest (pneumocat, docker)
Process completed with exit code 1.
pytest (propr/logratio, docker)
Process completed with exit code 1.
pytest (propr/logratio, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3C10:6B3E:6B7155:DBFD22:651FD708.
pytest (propr/logratio, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (propr/logratio, docker)
Invalid URL
pytest (propr/logratio, singularity)
Process completed with exit code 1.
pytest (propr/logratio, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID A410:7C8D:4EB6B:A13F3:651FD676.
pytest (propr/logratio, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (propr/logratio, singularity)
Invalid URL
pytest (pneumocat, conda)
Process completed with exit code 1.
pytest (pneumocat, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6818:4855:615A7E:6552C9:651FD641.
pytest (pneumocat, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (pneumocat, conda)
Invalid URL
pytest (samtools/reheader, conda)
Process completed with exit code 1.
pytest (samtools/reheader, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 0400:96AC:894165:1196993:651FDC43.
pytest (samtools/reheader, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (samtools/reheader, conda)
Invalid URL
pytest (propr/propd, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 1D80:0163:24869:4ADA2:651FDB79.
pytest (propr/propd, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (propr/propd, docker)
Invalid URL
pytest (propr/propd, docker)
Process completed with exit code 1.
pytest (seqkit/sliding, conda)
Process completed with exit code 1.
pytest (seqkit/sliding, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3800:73AD:11600:23AF9:651FDC5C.
pytest (seqkit/sliding, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (seqkit/sliding, conda)
Invalid URL
pytest (shapeit5/ligate, singularity)
Process completed with exit code 1.
pytest (shapeit5/ligate, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID F410:686B:7DDE91:1023F4A:651FDC9F.
pytest (shapeit5/ligate, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/ligate, singularity)
Invalid URL
pytest (proteus/readproteingroups, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID FFC0:01B7:859C83:11215F1:651FDBD7.
pytest (proteus/readproteingroups, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (proteus/readproteingroups, docker)
Invalid URL
pytest (proteus/readproteingroups, docker)
Process completed with exit code 1.
pytest (proteus/readproteingroups, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID A3C0:2E67:7181BD:E858FD:651FDBA3.
pytest (proteus/readproteingroups, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (proteus/readproteingroups, conda)
Invalid URL
pytest (proteus/readproteingroups, conda)
Process completed with exit code 1.
pytest (samtools/reheader, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 7800:5D3D:7B15F5:FCAC12:651FDC55.
pytest (samtools/reheader, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (samtools/reheader, singularity)
Invalid URL
pytest (samtools/reheader, singularity)
Process completed with exit code 1.
pytest (shapeit5/ligate, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID E808:9306:617BC0:65AE32:651FDC9A.
pytest (shapeit5/ligate, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/ligate, conda)
Invalid URL
pytest (shapeit5/ligate, conda)
Process completed with exit code 1.
pytest (purgedups/histplot, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 34C0:449A:8CA39B:1200D01:651FDC08.
pytest (purgedups/histplot, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (purgedups/histplot, docker)
Invalid URL
pytest (purgedups/histplot, docker)
Process completed with exit code 1.
pytest (proteus/readproteingroups, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3818:4B1E:268BE:4F37F:651FDBAD.
pytest (proteus/readproteingroups, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (proteus/readproteingroups, singularity)
Invalid URL
pytest (proteus/readproteingroups, singularity)
Process completed with exit code 1.
pytest (purgedups/histplot, conda)
Process completed with exit code 1.
pytest (purgedups/histplot, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 4420:11A3:EDCDB:1E38C4:651FDBFB.
pytest (purgedups/histplot, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (purgedups/histplot, conda)
Invalid URL
pytest (samtools/reheader, docker)
Process completed with exit code 1.
pytest (samtools/reheader, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6800:28C7:FC01:20668:651FDC41.
pytest (samtools/reheader, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (samtools/reheader, docker)
Invalid URL
pytest (quilt/quilt, docker)
Process completed with exit code 1.
pytest (quilt/quilt, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 7800:8E7B:D17E:1AE9F:651FDC30.
pytest (quilt/quilt, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (quilt/quilt, docker)
Invalid URL
pytest (propr/propd, singularity)
Process completed with exit code 1.
pytest (propr/propd, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 87C0:9419:63F922:68199B:651FDB8A.
pytest (propr/propd, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (propr/propd, singularity)
Invalid URL
pytest (purgedups/histplot, singularity)
Process completed with exit code 1.
pytest (purgedups/histplot, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5408:0D92:69B1BA:D8CC6E:651FDBEF.
pytest (purgedups/histplot, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (purgedups/histplot, singularity)
Invalid URL
pytest (shapeit5/phaserare, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3400:7014:61D450:6604C9:651FDD18.
pytest (shapeit5/phaserare, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/phaserare, docker)
Invalid URL
pytest (shapeit5/phaserare, docker)
Process completed with exit code 1.
pytest (shapeit5/switch, docker)
Process completed with exit code 1.
pytest (shapeit5/switch, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6480:3D8A:8DA490:122566D:651FDD23.
pytest (shapeit5/switch, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/switch, docker)
Invalid URL
pytest (shapeit5/phaserare, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 0800:9FB3:8CDEE7:1208EFD:651FDD16.
pytest (shapeit5/phaserare, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/phaserare, conda)
Invalid URL
pytest (shapeit5/phaserare, conda)
Process completed with exit code 1.
pytest (shapeit5/phaserare, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8800:8C96:9D9D22:1423A03:651FDD1C.
pytest (shapeit5/phaserare, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/phaserare, singularity)
Invalid URL
pytest (shapeit5/phaserare, singularity)
Process completed with exit code 1.
pytest (quilt/quilt, conda)
Process completed with exit code 1.
pytest (quilt/quilt, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5800:9D45:6BE18B:7007C4:651FDC16.
pytest (quilt/quilt, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (quilt/quilt, conda)
Invalid URL
pytest (seqkit/sliding, singularity)
Process completed with exit code 1.
pytest (seqkit/sliding, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID CC00:0C5E:A1E6DD:14A9742:651FDCA2.
pytest (seqkit/sliding, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (seqkit/sliding, singularity)
Invalid URL
pytest (shapeit5/phasecommon, docker)
Process completed with exit code 1.
pytest (shapeit5/phasecommon, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8028:7BC9:91AFF1:12A1F56:651FDD04.
pytest (shapeit5/phasecommon, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/phasecommon, docker)
Invalid URL
pytest (quilt/quilt, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8C80:0903:6FC6B5:E4C954:651FDC29.
pytest (quilt/quilt, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (quilt/quilt, singularity)
Invalid URL
pytest (quilt/quilt, singularity)
Process completed with exit code 1.
pytest (shapeit5/ligate, docker)
Process completed with exit code 1.
pytest (shapeit5/ligate, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID BC00:4BF1:7D0A76:FF3248:651FDCA8.
pytest (shapeit5/ligate, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/ligate, docker)
Invalid URL
pytest (spring/compress, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID E400:7186:704045:E5F7B9:651FDD80.
pytest (spring/compress, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (spring/compress, conda)
Invalid URL
pytest (spring/compress, conda)
Process completed with exit code 1.
pytest (shapeit5/phasecommon, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 47C0:584E:97268E:135138F:651FDCB5.
pytest (shapeit5/phasecommon, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/phasecommon, conda)
Invalid URL
pytest (shapeit5/phasecommon, conda)
Process completed with exit code 1.
pytest (shapeit5/phasecommon, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 2818:2F92:78A4E8:F6A0FC:651FDD09.
pytest (shapeit5/phasecommon, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/phasecommon, singularity)
Invalid URL
pytest (shapeit5/phasecommon, singularity)
Process completed with exit code 1.
pytest (spring/decompress, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 3C08:5AC8:8E617D:1237A1F:651FDE15.
pytest (spring/decompress, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (spring/decompress, docker)
Invalid URL
pytest (spring/decompress, docker)
Process completed with exit code 1.
pytest (shapeit5/switch, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5440:449A:8EAD26:12433A7:651FDD60.
pytest (shapeit5/switch, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/switch, singularity)
Invalid URL
pytest (shapeit5/switch, singularity)
Process completed with exit code 1.
pytest (spring/compress, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID AC10:9D60:6A6A11:6EA8B3:651FDDCD.
pytest (spring/compress, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (spring/compress, singularity)
Invalid URL
pytest (spring/compress, singularity)
Process completed with exit code 1.
pytest (spring/compress, docker)
Process completed with exit code 1.
pytest (spring/compress, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 1380:8C96:9E5122:143A8C8:651FDD82.
pytest (spring/compress, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (spring/compress, docker)
Invalid URL
pytest (seqkit/sliding, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 43C0:9323:7455F3:EDFFE0:651FDC96.
pytest (seqkit/sliding, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (seqkit/sliding, docker)
Invalid URL
pytest (seqkit/sliding, docker)
Process completed with exit code 1.
pytest (shapeit5/switch, conda)
Process completed with exit code 1.
pytest (shapeit5/switch, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID BC40:881E:713CD7:756DCC:651FDD25.
pytest (shapeit5/switch, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (shapeit5/switch, conda)
Invalid URL
pytest (spring/decompress, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 5408:104A:639E3B:67DC38:651FDE70.
pytest (spring/decompress, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (spring/decompress, singularity)
Invalid URL
pytest (spring/decompress, singularity)
Process completed with exit code 1.
pytest (stitch, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 8440:9323:77FCE7:F57102:651FDEEE.
pytest (stitch, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (stitch, docker)
Invalid URL
pytest (stitch, docker)
Process completed with exit code 1.
pytest (stecfinder, docker)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 87C0:4E6A:83CC49:10DF00C:651FDEA3.
pytest (stecfinder, docker)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (stecfinder, docker)
Invalid URL
pytest (stecfinder, docker)
Process completed with exit code 1.
pytest (stecfinder, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 2000:4972:794EF3:F7CAA5:651FDE91.
pytest (stecfinder, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (stecfinder, conda)
Invalid URL
pytest (stecfinder, conda)
Process completed with exit code 1.
pytest (spring/decompress, conda)
Process completed with exit code 1.
pytest (spring/decompress, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 0400:7BEA:7D5569:101B415:651FDDC7.
pytest (spring/decompress, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (spring/decompress, conda)
Invalid URL
pytest (stecfinder, singularity)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID B380:9323:77DCE2:F52FB8:651FDEDB.
pytest (stecfinder, singularity)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (stecfinder, singularity)
Invalid URL
pytest (stecfinder, singularity)
Process completed with exit code 1.
pytest (stitch, conda)
Process completed with exit code 1.
pytest (stitch, conda)
Could not retrieve Nextflow release matching . API rate limit exceeded for installation ID 30692499. If you reach out to GitHub Support for help, please include the request ID 6F00:3AA0:93E48A:12EF678:651FDEF2.
pytest (stitch, conda)
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
pytest (stitch, conda)
Invalid URL
confirm-pass
Process completed with exit code 1.
nf-test (fastqc, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/makeblastdb, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/tblastn, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blat, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/blastp, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bracken/bracken, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (conifer, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (amrfinderplus/run, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/blastn, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bcl2fastq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (abritamr/run, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bamcmp, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bclconvert, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (gem3/gem3indexer, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/assesssignificance, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/freec, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (custom/matrixfilter, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/freec2bed, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse/concordance, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/freec2circos, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/makegraph, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (gatk4/markduplicates, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (fcs/fcsadaptor, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse2/concordance, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse2/splitreference, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse2/splitreference, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (cellranger/count, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse/chunk, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse2/ligate, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (bcftools/index, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse2/chunk, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse/phase, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse/ligate, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (glimpse2/phase, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (fastqc, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/somatic, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/somatic, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/somatic, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/preloadedkrakenuniq, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/preloadedkrakenuniq, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/preloadedkrakenuniq, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (mmseqs/cluster, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (mmseqs/cluster, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/cluster, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/build, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/build, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/build, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (hypo, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (hypo, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (hypo, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/download, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/download, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/download, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/build, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/build, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/build, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/build, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/build, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/build, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/download, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/download, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/download, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/preloadedkrakenuniq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/preloadedkrakenuniq, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/preloadedkrakenuniq, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/preloadedkrakenuniq, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/preloadedkrakenuniq, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/preloadedkrakenuniq, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (hypo, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (hypo, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (hypo, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (nonpareil, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (nonpareil, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (nonpareil, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/tumoronly, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/tumoronly, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/tumoronly, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/somatic, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/somatic, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/somatic, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/germline, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/germline, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/germline, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (multiqc, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (multiqc, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (multiqc, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/germline, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/germline, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/germline, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/tumoronly, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/tumoronly, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/tumoronly, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (krakenuniq/download, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/download, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (krakenuniq/download, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (hypo, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (hypo, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (hypo, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/linclust, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (mmseqs/linclust, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (mmseqs/linclust, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/cluster, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (mmseqs/cluster, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (mmseqs/cluster, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (multiqc, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (multiqc, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (multiqc, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/cluster, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (mmseqs/cluster, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/cluster, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/somatic, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/somatic, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/somatic, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/linclust, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (mmseqs/linclust, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (mmseqs/linclust, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/tumoronly, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/tumoronly, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (manta/tumoronly, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/linclust, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (mmseqs/linclust, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (mmseqs/linclust, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (nonpareil, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (nonpareil, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (nonpareil, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/logratio, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (propr/logratio, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/logratio, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (nonpareil, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (nonpareil, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (nonpareil, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/germline, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/germline, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (manta/germline, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (multiqc, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (multiqc, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (multiqc, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (propr/propd, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (propr/propd, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/propd, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (pneumocat, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (pneumocat, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (pneumocat, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (pneumocat, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (pneumocat, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (pneumocat, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/logratio, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (propr/logratio, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/logratio, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (propr/logratio, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (propr/logratio, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/logratio, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (pneumocat, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (pneumocat, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (pneumocat, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (samtools/reheader, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (samtools/reheader, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (samtools/reheader, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/propd, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (propr/propd, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/propd, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (seqkit/sliding, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (seqkit/sliding, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (seqkit/sliding, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/ligate, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/ligate, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/ligate, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (proteus/readproteingroups, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (proteus/readproteingroups, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (proteus/readproteingroups, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (proteus/readproteingroups, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (proteus/readproteingroups, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (proteus/readproteingroups, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (samtools/reheader, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (samtools/reheader, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (samtools/reheader, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (subworkflows/bam_cnv_wisecondorx, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/ligate, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/ligate, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/ligate, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (purgedups/histplot, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (purgedups/histplot, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (purgedups/histplot, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (proteus/readproteingroups, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (proteus/readproteingroups, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (proteus/readproteingroups, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (purgedups/histplot, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (purgedups/histplot, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (purgedups/histplot, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (samtools/reheader, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (samtools/reheader, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (samtools/reheader, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (quilt/quilt, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (quilt/quilt, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (quilt/quilt, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (propr/propd, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (propr/propd, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (propr/propd, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (subworkflows/fastq_align_bamcmp_bwa, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (purgedups/histplot, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (purgedups/histplot, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (purgedups/histplot, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/phaserare, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phaserare, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/phaserare, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/switch, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/switch, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/switch, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (subworkflows/initialise, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phaserare, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phaserare, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/phaserare, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/phaserare, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phaserare, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/phaserare, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (subworkflows/fasta_clean_fcs, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (quilt/quilt, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (quilt/quilt, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (quilt/quilt, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (seqkit/sliding, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (seqkit/sliding, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (seqkit/sliding, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/phasecommon, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phasecommon, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/phasecommon, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (quilt/quilt, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (quilt/quilt, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (quilt/quilt, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/ligate, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/ligate, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/ligate, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (subworkflows/vcf_phase_shapeit5, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (wisecondorx/predict, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (umicollapse, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/compress, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/compress, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/compress, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (subworkflows/vcf_impute_glimpse, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (tcoffee/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (topas/gencons, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phasecommon, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phasecommon, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/phasecommon, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/phasecommon, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/phasecommon, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/phasecommon, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (spring/decompress, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/decompress, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/decompress, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/switch, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/switch, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/switch, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/compress, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/compress, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/compress, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (spring/compress, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/compress, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (spring/compress, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (seqkit/sliding, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (seqkit/sliding, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (seqkit/sliding, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (shapeit5/switch, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (shapeit5/switch, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (shapeit5/switch, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/decompress, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/decompress, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/decompress, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (stitch, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (stitch, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (stitch, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (stecfinder, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (stecfinder, docker)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (stecfinder, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (stecfinder, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (stecfinder, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (stecfinder, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (spring/decompress, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (spring/decompress, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (spring/decompress, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (stecfinder, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (stecfinder, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (stecfinder, singularity)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (stitch, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (stitch, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (stitch, conda)
Nextflow appears to have installed correctly, but an error was thrown while running it.
pytest (stitch, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/