Update/gatk4spark applybqsr nftest (#4613) #65
adamrtalbottest.yml
on: push
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
Annotations
18 errors
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pytest (bowtie/align, conda)
Process completed with exit code 1.
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nf-core-lint (blast/blastn)
Process completed with exit code 1.
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nf-core-lint (checkm2/predict)
Process completed with exit code 1.
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nf-core-lint (bowtie2/align)
Process completed with exit code 1.
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nf-core-lint (dragmap/align)
Process completed with exit code 1.
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nf-core-lint (narfmap/align)
Process completed with exit code 1.
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nf-core-lint (freyja/boot)
Process completed with exit code 1.
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pytest (motus/profile, docker)
EACCES: permission denied, scandir '/home/runner/pytest_workflow_jz39tpbf/motus_profile_test_motus_profile_single_end/work/7b/be5251071b309fccee00e827fef960/db_mOTU'
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pytest (motus/profile, docker)
Process completed with exit code 1.
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nf-core-lint (mtmalign/align)
Process completed with exit code 1.
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nf-core-lint (narfmap/hashtable)
Process completed with exit code 1.
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nf-core-lint (freyja/demix)
Process completed with exit code 1.
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nf-core-lint (xz/decompress)
Process completed with exit code 1.
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nf-core-lint (tcoffee/irmsd)
Process completed with exit code 1.
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nf-test (subworkflows/bam_markduplicates_picard, conda)
Process completed with exit code 1.
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pytest (motus/profile, singularity)
Process completed with exit code 1.
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pytest (motus/profile, conda)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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logs-conda-
Expired
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14.5 GB |
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logs-singularity-
Expired
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14.5 GB |
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