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Add small change to custom/sratoolsncbisettings (#4717) #67

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Add small change to custom/sratoolsncbisettings (#4717)

Add small change to custom/sratoolsncbisettings (#4717) #67

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Job Run time
editorconfig
10s
pre-commit
17s
prettier
27s
nf-test-changes
8s
pytest-changes
6s
pytest (bases2fastq, docker)
2m 47s
pytest (fqtk, docker)
2m 5s
pytest (fqtk, singularity)
2m 42s
pytest (fqtk, conda)
2m 50s
pytest (samtools/fasta, docker)
2m 5s
pytest (samtools/fasta, singularity)
2m 17s
pytest (samtools/fasta, conda)
2m 37s
pytest (sgdemux, docker)
2m 1s
pytest (sgdemux, singularity)
2m 2s
pytest (sgdemux, conda)
2m 21s
pytest (subworkflows/utils_nfcore_pipeline, docker)
2m 13s
pytest (subworkflows/utils_nfcore_pipeline, singularity)
2m 4s
pytest (subworkflows/utils_nfcore_pipeline, conda)
2m 1s
nf-core-lint (bases2fastq)
1m 17s
nf-core-lint (fqtk)
1m 18s
nf-core-lint (samtools/fasta)
47s
nf-test (ganon/buildcustom, docker)
5m 5s
nf-core-lint (sgdemux)
50s
nf-test (ganon/buildcustom, singularity)
4m 53s
nf-core-lint (subworkflows/utils_nfcore_pipeline)
37s
nf-test (ganon/report, docker)
3m 35s
nf-core-lint (ganon/buildcustom)
59s
nf-test (ganon/report, singularity)
3m 40s
nf-core-lint (ganon/report)
51s
nf-test (ganon/table, docker)
2m 34s
nf-core-lint (ganon/table)
53s
nf-test (ganon/table, singularity)
3m 41s
nf-core-lint (ganon/classify)
46s
nf-test (ganon/classify, docker)
4m 28s
nf-core-lint (multiqc)
45s
nf-test (ganon/classify, singularity)
4m 21s
nf-core-lint (qualimap/bamqccram)
42s
nf-test (multiqc, docker)
2m 15s
nf-core-lint (qualimap/rnaseq)
41s
nf-test (multiqc, singularity)
2m 33s
nf-core-lint (qualimap/bamqc)
40s
nf-test (multiqc, conda)
3m 18s
nf-core-lint (custom/dumpsoftwareversions)
48s
nf-test (qualimap/bamqccram, docker)
2m 28s
nf-core-lint (custom/sratoolsncbisettings)
41s
nf-test (qualimap/bamqccram, singularity)
2m 2s
nf-core-lint (vcf2db)
43s
nf-test (qualimap/bamqccram, conda)
2m 47s
nf-core-lint (foldcomp/decompress)
40s
nf-test (qualimap/rnaseq, docker)
2m 31s
nf-core-lint (untar)
55s
nf-test (qualimap/rnaseq, singularity)
2m 12s
nf-core-lint (kraken2/kraken2)
1m 9s
nf-test (qualimap/rnaseq, conda)
2m 30s
nf-core-lint (subworkflows/fasta_explore_search_plot_tidk)
39s
nf-test (qualimap/bamqc, docker)
2m 35s
nf-core-lint (subworkflows/fastq_download_prefetch_fasterqdump_sratools)
46s
nf-test (qualimap/bamqc, singularity)
3m 15s
nf-core-lint (subworkflows/utils_nfcore_pipeline)
54s
nf-test (qualimap/bamqc, conda)
2m 30s
nf-test (custom/dumpsoftwareversions, docker)
2m 14s
nf-test (custom/dumpsoftwareversions, singularity)
2m 1s
nf-test (custom/sratoolsncbisettings, docker)
3m 1s
nf-test (custom/sratoolsncbisettings, singularity)
3m 32s
nf-test (custom/sratoolsncbisettings, conda)
4m 1s
nf-test (vcf2db, docker)
2m 23s
nf-test (vcf2db, singularity)
2m 9s
nf-test (vcf2db, conda)
2m 42s
nf-test (foldcomp/decompress, docker)
1m 55s
nf-test (foldcomp/decompress, singularity)
2m 24s
nf-test (foldcomp/decompress, conda)
2m 39s
nf-test (untar, docker)
2m 40s
nf-test (untar, singularity)
2m 39s
nf-test (untar, conda)
4m 1s
nf-test (kraken2/kraken2, docker)
2m 30s
nf-test (kraken2/kraken2, singularity)
2m 7s
nf-test (kraken2/kraken2, conda)
3m 33s
nf-test (subworkflows/fasta_explore_search_plot_tidk, docker)
2m 8s
nf-test (subworkflows/fasta_explore_search_plot_tidk, singularity)
2m 35s
nf-test (subworkflows/fasta_explore_search_plot_tidk, conda)
4m 27s
nf-test (subworkflows/fastq_download_prefetch_fasterqdump_sratools, docker)
2m 31s
nf-test (subworkflows/fastq_download_prefetch_fasterqdump_sratools, singularity)
3m 8s
nf-test (subworkflows/fastq_download_prefetch_fasterqdump_sratools, conda)
3m 31s
nf-test (subworkflows/utils_nfcore_pipeline, docker)
2m 18s
nf-test (subworkflows/utils_nfcore_pipeline, singularity)
2m 10s
nf-test (subworkflows/utils_nfcore_pipeline, conda)
2m 18s
confirm-pass
1s
3h 4m 25s