update setup.py to explicitely name dependencies, including two publi…

…c repositories. should aid in pip installation

requirements.txt

@@ -4,6 +4,6 @@ pyasdf==0.7.2
 pandas==1.1.0
 pypdf2==1.26.0
 pyyaml==5.4
-https://github.com/bch0w/pyflex/archive/refs/tags/0.2.0.tar.gz
-# http://github.com/bch0w/pyflex/tarball/return_reject_windows
+basemap==1.3.0
+https://github.com/bch0w/pyflex/tarball/master
 http://github.com/krischer/pyadjoint/tarball/master

setup.cfg

@@ -1,2 +1,2 @@
 [metadata]
-description-file = README.md
+description_file = README.md

setup.py

@@ -1,16 +1,7 @@
 import os
 from setuptools import setup, find_packages
 
-
-# Get the list of required dependencies from requirements.txt
-path_pyatoa = os.path.dirname(os.path.realpath(__file__))
-req_file = os.path.join(path_pyatoa, "requirements.txt")
-if os.path.exists(req_file):
-    with open(req_file, "r") as f:
-        install_requires = list(f.read().splitlines())
-else:
-    install_requires = []
-
+# Remove the public repos (not hosted) from install requires, put in dependency
 setup(name='pyatoa',
       version='0.1.0',
       description="Python's Adjoint Tomography Operations Assistant",
@@ -19,6 +10,18 @@
       author='Bryant Chow',
       author_email='[email protected]',
       license='GPL-3.0',
+      python_requires=">=3.7",
       packages=find_packages(),
-      install_requires=[],
-      zip_safe=False)
+      install_requires=[
+          "obspy==1.2.2",
+          "matplotlib==3.0.3",
+          "pyasdf==0.7.2",
+          "pandas==1.1.0",
+          "pypdf2==1.26.0",
+          "pyyaml==5.4",
+          "basemap==1.3.0",
+          "pyflex @ git+https://github.com/bch0w/[email protected]",
+          "pyadjoint @ git+https://github.com/krischer/pyadjoint"
+          ], 
+      zip_safe=False
+      )