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Installation Error #451

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parkjooyoung99 opened this issue Mar 26, 2024 · 1 comment
Open

Installation Error #451

parkjooyoung99 opened this issue Mar 26, 2024 · 1 comment

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@parkjooyoung99
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<--
I am using R 4.3.3 and trying to install SCENIC following the instruction here.
At the step installing SCENIC,
if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")
devtools::install_github("aertslab/SCENIC")

i am getting an error below
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:
cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3/PACKAGES'
Error: Failed to install 'SCENIC' from GitHub:
error reading from connection

Is there a way to solve this issue?
-->

@ghuls
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ghuls commented Apr 5, 2024

Try to use pySCENIC instead of SCENIC (deprecated).

Container versions are available:
https://pyscenic.readthedocs.io/en/latest/installation.html#docker-podman-and-singularity-apptainer-images

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