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Issues: aertslab/SCENIC

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#236 by s-aibar was closed Apr 14, 2022
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104 Open 197 Closed
104 Open 197 Closed
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Issues list

Can this be used for bulk-tissue data?
#467 opened Sep 19, 2024 by guandailu
initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1)
#461 opened Jul 1, 2024 by YSYL-FSH
shiny::runApp NOT FOUND
#455 opened May 23, 2024 by TZUwang
1
No questions here, please! runSCENIC_3_scoreCells :Error in signif(trhAssignment, 3)
#454 opened May 14, 2024 by ManarHashemTaha
Error in file(con, "w") : all connections are in use
#453 opened Apr 30, 2024 by TZUwang
2
Installation Error
#451 opened Mar 26, 2024 by parkjooyoung99
1
Running GRNBoost as a batch job
#449 opened Mar 19, 2024 by MehvesOzel
could not find function "AUCell_createViewerApp"
#448 opened Mar 19, 2024 by Eunice0519
2
what is the difference between "motifAnnotations" and "motifAnnotations_hgnc_v9" , and what impact will it have on the results?
#447 opened Mar 13, 2024 by Chenchen3Chen
Could not initialize SCENIC
#446 opened Mar 3, 2024 by synatkeamsk
1
Scenic on HPC
#445 opened Feb 27, 2024 by Sogand65
1
Details about plot SCENIC results with cytoscape
#443 opened Feb 16, 2024 by DiracZhu1998
1
Error message during running runSCENIC_3_scoreCells()
#439 opened Jan 18, 2024 by jiuquzjw
6
run_SCENIC_2_createRegulons(): Warning
#438 opened Jan 11, 2024 by btsanketh
1
RSS top eRegulon jaccard heatmap
#436 opened Jan 4, 2024 by alirosen
Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores,
#429 opened Dec 6, 2023 by rraky
scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget")) #** Only for toy run!!
#428 opened Nov 30, 2023 by kakaisi
runSCENIC_3_scoreCells error
#427 opened Nov 24, 2023 by alisyedraza1
2
runSCENIC_3_scoreCells() error
#425 opened Nov 23, 2023 by alisyedraza1
3
TF dropout when running runSCENIC_2_createRegulons(scenicOptions)
#424 opened Nov 22, 2023 by rmauron
No questions here, please!
#423 opened Nov 22, 2023 by alisyedraza1
1
Comparison between two SCENIC networks
#419 opened Nov 5, 2023 by miguecass
1
exportsForArboreto input matrix log transformed or not
#418 opened Oct 22, 2023 by iichelhadi
These errors seem to be related to the R version...
#416 opened Oct 10, 2023 by jwg054000
p-value of regulon activity calculation
#409 opened Aug 29, 2023 by wingkyBs
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