Merge pull request #134 from agdestein/excise-paper

Excise paper

.github/workflows/CompatHelper.yml

@@ -27,7 +27,5 @@ jobs:
                   "examples",
                   "lib/NeuralClosure",
                   "lib/NeuralClosure/test",
-                  "lib/PaperDC",
-                  "lib/SymmetryClosure",
               ],
           )

README.md

@@ -36,8 +36,8 @@ for examples of some typical workflows. More examples can be found in the
 
 ## Source code for paper
 
-See [here](./lib/PaperDC) for the source code used in the paper
-[Discretize first, filter next: learning divergence-consistent closure models for large-eddy simulation](https://arxiv.org/abs/2403.18088).
+See [this repository](https://github.com/agdestein/DivergenceConsistency) for the source code used in the paper
+[Discretize first, filter next: learning divergence-consistent closure models for large-eddy simulation](https://www.sciencedirect.com/science/article/pii/S0021999124008258).
 
 ## Gallery
 

docs/README.md

@@ -8,31 +8,11 @@ Documentation for
 To build the documentation locally, run:
 
 ```sh
-julia --project=docs docs/make.jl
+julia --project=docs -e "using Pkg; Pkg.instantiate()"
 ```
 
-## Build documentation with live preview
-
-Add a [`LiveServer.jl`](https://github.com/tlienart/LiveServer.jl) environment:
+and then run
 
 ```sh
-julia --project=@LiveServer -e 'using Pkg; Pkg.add("LiveServer")'
-```
-
-Currently, two julia processes are required for local documentation development.
-See <https://luxdl.github.io/DocumenterVitepress.jl/dev/getting_started#Preview-Documentation-Development-Instantly>.
-
-The script `servedocs.jl` builds the documentation and rebuilds on changes.
-The script `servevitepress.jl` serves the vitepress site live.
-
-In two separate shells, run
-
-```sh
-julia .tools/servedocs.jl
-```
-
-and, once it is done, then run in a second shell
-
-```sh
-julia .tools/servevitepress.jl
+julia --project=docs docs/make.jl
 ```

docs/src/examples/index.md

@@ -118,27 +118,6 @@ const temperature = [
     desc: "Convection generated by a temperature gradient between hot and cold fluids",
   },
 ];
-
-const neural = [
-  {
-    href: "generated/prioranalysis",
-    src: "../logo.svg",
-    caption: "Filter analysis",
-    desc: "Compare discrete filters and their properties with DNS data",
-  },
-  {
-    href: "generated/postanalysis",
-    src: "../logo.svg",
-    caption: "CNN closure models",
-    desc: "Compare CNN closure models for different filters, grid sizes, and projection orders",
-  },
-  {
-    href: "generated/symmetryanalysis",
-    src: "../logo.svg",
-    caption: "Symmetry-preserving closure models",
-    desc: "Train group equivariant CNNs and compare to normal CNNs",
-  },
-];
 </script>
 ```
 
@@ -169,9 +148,3 @@ folder.
 ```@raw html
 <Gallery :images="temperature" />
 ```
-
-## Neural network closure models
-
-```@raw html
-<Gallery :images="neural" />
-```