Fix bug calculation percent duplicates and clonality

Fixed bug in the calculation of percent of duplicates and clonality due to wrong assumption in the numbers stored in the samtools flagstats.

Bumped version in python code

Minor release fixing the version of endorspy

Fixed bug json production and READ.me

This release includes the following changes:

• Removed incorrect information in the usage in READ.me
• Fixed bug for json production, now a json is being produced

Version 1.0.0

Added new flags and functionality to the original version to calculate different percent in target as well as clonality

Change license

Change license from GPL to MIT for making it compatible for downstream tools

Bioconda release

Made the program executable and prepared it for bioconda

minor update

Solved issue #4 and added informative warnings for when no reads present in the fastq and when no reads mapped in the bam file. Additionally changed the json file to include a tag "id" and formating the decimal number to 2 for the multiQC report for nf-core/eager

minor update

Consistent argument parsing with args.parse as suggested by @maxibor

endorS.py first release

First release of endorS.py.
endorS.py calculates endogenous DNA from samtools flagstat files and prints to screen