Full model description is published in: Barnhart, E., Allard, J., Mogilner, A., Theriot, J., Adhesion-dependent wave generation in crawling cells. Current Biology 27: 27:38 (2017).
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In the folder /src/, open Matlab script doPdeSingle.m.
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Create a folder /runs/ in the same directory as the repository. Large files will be deposited here so it can be left out of the repository sync if desired.
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Edit the line runName = 'testrun1'; to a desired runName.
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Run doPdeSingle.m. This will create a directory in /runs/ with the runName, perform a single execution of the model, and run analysis of the results that will generate plots.
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Matlab 2018a
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Mex requires a C compiler