Release v0.5.1

CHANGELOG.md

@@ -6,7 +6,22 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyrodigal/compare/v0.5.0...HEAD
+[Unreleased]: https://github.com/althonos/pyrodigal/compare/v0.5.1...HEAD
+
+
+## [v0.5.1] - 2021-09-04
+[v0.5.1]: https://github.com/althonos/pyrodigal/compare/v0.5.0...v0.5.1
+
+### Added
+- Additional `Gene` properties to access the score
+
+### Changed
+- Use more efficient `PyUnicode` macros when reading or creating a string containing a nucleotide or a protein sequence.
+- Release the GIL when creating a bitmap for an `str` given as input to `Pyrodigal.find_genes`.
+- Release the GIL when creating the protein sequence returned by `Gene.translate`.
+
+### Fixed
+- `Pyrodigal.find_genes` and `Gene.translate` not behaving like Prodigal when handling sequences with unknown nucleotides.
 
 
 ## [v0.5.0] - 2021-06-15

pyrodigal/__init__.py

@@ -8,6 +8,6 @@
 
 __author__ = "Martin Larralde <[email protected]>"
 __license__ = "GPLv3"
-__version__ = "0.5.0"
+__version__ = "0.5.1"
 
 _Sequence.register(Genes)

pyrodigal/__init__.pyx

@@ -585,6 +585,9 @@ cdef class Gene:
     @property
     def cscore(self):
         """`float`: The coding score for the start node, based on 6-mer usage.
+
+        .. versionadded:: 0.5.1
+
         """
         assert self.gene != NULL
         assert self.nodes != NULL
@@ -604,6 +607,9 @@ cdef class Gene:
     @property
     def sscore(self):
         """`float`: The score for the strength of the start codon.
+
+        .. versionadded:: 0.5.1
+
         """
         assert self.gene != NULL
         assert self.nodes != NULL
@@ -612,6 +618,9 @@ cdef class Gene:
     @property
     def tscore(self):
         """`float`: The score for the codon kind (ATG/GTG/TTG).
+
+        .. versionadded:: 0.5.1
+
         """
         assert self.gene != NULL
         assert self.nodes != NULL
@@ -620,6 +629,9 @@ cdef class Gene:
     @property
     def uscore(self):
         """`float`: The score for the upstream regions.
+
+        .. versionadded:: 0.5.1
+
         """
         assert self.gene != NULL
         assert self.nodes != NULL