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Releases: amnona/dbbact-calour

v1.15.1

23 May 09:10
@amnona amnona
v1.15.1
e541bf5
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v1.15.1 Latest
Latest

Initial dbBact paper release

Assets 2
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dbBact-calour v1.15.0

19 Apr 14:10
@amnona amnona
v1.15.0
11a20b9
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dbBact-calour v1.15.0

Fix:
Add random_seed support for sample_enrichment (used for the q2-dbbact plugin)

Assets 2
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dbbact-calour v1.12.0

05 Jun 16:09
@amnona amnona
v1.12.0
a4b8439
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dbbact-calour v1.12.0

New functions:
plot_term_pcoa() : Create a PCA plot based on per-sample dbBact terms, with interpretable term axes.

Assets 2
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Release v1.11.0

25 Aug 11:50
@github-actions github-actions
v1.11.0
70a05b3
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Release v1.11.0

v1.11.0 (2021-08-25)

Feat

  • Added sample_to_many_enrich() to identify features enriched in one set of samples (even one sample) compared to another set of samples

Fix

  • requirements.txt: add requests to requirements so importing dbbact-calour will work

v1.10.1 (2021-08-12)

Fix

  • fix deepcopy in enrichment()

v1.10.0 (2021-08-11)

Feat

  • Add support for "parentterm" term_type in enrichment()

v1.9.0 (2021-07-25)

Feat

  • change to ontology term_id based annotations in add annotation gui

v1.8.0 (2021-06-23)

Feat

  • Add annotationid to annotation enrichemnt analysis

Fix

  • fix load message for adding dbbact terms
  • remove debug prints

v1.7.0 (2021-05-28)

Feat

  • Fix enrichment so replicates results across runs with same random_seed

Fix

  • change print to logger.debug

v1.6.0 (2021-05-26)

Feat

  • update label in venn diagram to show corrent number if clipped at max_size

v1.5.1 (2021-05-20)

Fix

  • remove old code for background enrichment

v1.5.0 (2021-05-20)

Feat

  • add background enrichment support

v1.4.0 (2020-12-27)

Feat

  • update term heatmap colormap

Fix

  • update term heatmap to show by default the annotation

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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Release v1.9.0

24 Jul 21:18
@github-actions github-actions
v1.9.0
caed0f9
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Release v1.9.0

v1.9.0 (2021-07-25)

Feat

  • change to ontology term_id based annotations in add annotation gui

v1.8.0 (2021-06-23)

Feat

  • Add annotationid to annotation enrichemnt analysis

Fix

  • fix load message for adding dbbact terms
  • remove debug prints

v1.7.0 (2021-05-28)

Feat

  • Fix enrichment so replicates results across runs with same random_seed

Fix

  • change print to logger.debug

v1.6.0 (2021-05-26)

Feat

  • update label in venn diagram to show corrent number if clipped at max_size

v1.5.1 (2021-05-20)

Fix

  • remove old code for background enrichment

v1.5.0 (2021-05-20)

Feat

  • add background enrichment support

v1.4.0 (2020-12-27)

Feat

  • update term heatmap colormap

Fix

  • update term heatmap to show by default the annotation

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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Release v1.8.0

23 Jun 08:31
@github-actions github-actions
v1.8.0
11c625d
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Release v1.8.0

v1.8.0 (2021-06-23)

Feat

  • Add annotationid to annotation enrichemnt analysis

Fix

  • fix load message for adding dbbact terms
  • remove debug prints

v1.7.0 (2021-05-28)

Feat

  • Fix enrichment so replicates results across runs with same random_seed

Fix

  • change print to logger.debug

v1.6.0 (2021-05-26)

Feat

  • update label in venn diagram to show corrent number if clipped at max_size

v1.5.1 (2021-05-20)

Fix

  • remove old code for background enrichment

v1.5.0 (2021-05-20)

Feat

  • add background enrichment support

v1.4.0 (2020-12-27)

Feat

  • update term heatmap colormap

Fix

  • update term heatmap to show by default the annotation

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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Release v1.7.0

28 May 20:26
@github-actions github-actions
v1.7.0
575e4c9
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Release v1.7.0

v1.7.0 (2021-05-28)

Feat

  • Fix enrichment so replicates results across runs with same random_seed

Fix

  • change print to logger.debug

v1.6.0 (2021-05-26)

Feat

  • update label in venn diagram to show corrent number if clipped at max_size

v1.5.1 (2021-05-20)

Fix

  • remove old code for background enrichment

v1.5.0 (2021-05-20)

Feat

  • add background enrichment support

v1.4.0 (2020-12-27)

Feat

  • update term heatmap colormap

Fix

  • update term heatmap to show by default the annotation

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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Release v1.6.0

26 May 11:44
@github-actions github-actions
v1.6.0
6c64a76
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Release v1.6.0

v1.6.0 (2021-05-26)

Feat

  • update label in venn diagram to show corrent number if clipped at max_size

v1.5.1 (2021-05-20)

Fix

  • remove old code for background enrichment

v1.5.0 (2021-05-20)

Feat

  • add background enrichment support

v1.4.0 (2020-12-27)

Feat

  • update term heatmap colormap

Fix

  • update term heatmap to show by default the annotation

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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Release v1.4.0

27 Dec 21:55
@github-actions github-actions
v1.4.0
4c0b09d
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Release v1.4.0

v1.4.0 (2020-12-27)

Feat

  • update term heatmap colormap

Fix

  • update term heatmap to show by default the annotation

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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Release v1.3.0

27 Dec 12:39
@github-actions github-actions
v1.3.0
4d4618b
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Release v1.3.0

v1.3.0 (2020-12-27)

Feat

  • Add UI for term enrichment method

v1.2.0 (2020-12-18)

Feat

  • add fscore option and set fscore as default for ca.add_terms_to_features()
  • add sample_term_scores() method and update rank_enrichment() and sample_enrichment() to use it
  • add set_log_level() to DBBact class

Refactor

  • DBBact: move calculation of recall/precision etc. out of wordcloud function to get_wordcloud_stats

v1.1.1 (2020-12-02)

Fix

  • DBBact: fix error in rank_enrichment

v1.1.0 (2020-12-02)

Feat

  • DBBact: add rank_enrichment() to identify terms correlated with some per-feature stat

v1.0.4 (2020-12-02)

Fix

  • remove docs for smaller install

v1.0.3 (2020-12-02)

Fix

  • fix DBBact import in init.py

v1.0.2 (2020-12-01)

Refactor

  • add github workflows for automatic release and publish

v1.0.1 (2020-12-01)

Refactor

  • Start semantic versioning
Assets 2
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