stdpopsim-models

Requires stdpopsim, msprime, and demes.

Models for a given species (e.g., humans) can be constructed by

python convert_models.py HomSap

All implemented models from stdpopsim are then stored in demes format in ./catalog/HomSap/

We can run this script on all species in the catalog within python (this is a bit ugly):

import stdpopsim
import os
for species in stdpopsim.species.all_species():
    os.system(f"python convert_models.py {species.id}")