MAINT: Rename package to clinica-pydra-freesurfer

docs/index.rst

@@ -5,7 +5,7 @@ About pydra-freesurfer
 
 `FreeSurfer`_ is an open source package for the analysis and visualization of structural, functional, and diffusion neuroimaging data from cross-sectional and longitudinal studies.
 
-pydra-freesurfer provides Pydra tasks for running and composing FreeSurfer commands.
+clinica-pydra-freesurfer provides Pydra tasks for running and composing FreeSurfer commands.
 
 .. toctree::
    :maxdepth: 2

pyproject.toml

@@ -3,31 +3,31 @@ requires = ["hatchling"]
 build-backend = "hatchling.build"
 
 [project]
-name = "pydra-freesurfer"
+name = "clinica-pydra-freesurfer"
 version = "0.0.11"
-description = "Pydra tasks for FreeSurfer"
+description = "Pydra tasks for FreeSurfer designed for Clinica"
 readme = "README.md"
-requires-python = ">=3.7"
+requires-python = ">=3.8"
 license = "Apache-2.0"
 keywords = [
   "pydra",
   "freesurfer",
   "neuroimaging",
 ]
 authors = [
-  {name = "Ghislain Vaillant", email = "ghislain.vaillant@icm-institute.org"},
+  {name = "Ghislain Vaillant", email = "ghislain.vaillant@inria.fr"},
 ]
 classifiers = [
   "Development Status :: 3 - Alpha",
   "Intended Audience :: Science/Research",
   "License :: OSI Approved :: Apache Software License",
   "Operating System :: OS Independent",
   "Programming Language :: Python :: 3",
-  "Programming Language :: Python :: 3.7",
   "Programming Language :: Python :: 3.8",
   "Programming Language :: Python :: 3.9",
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
   "Topic :: Scientific/Engineering",
   "Topic :: Software Development :: Libraries",
 ]
@@ -37,12 +37,33 @@ dependencies = [
 ]
 
 [project.urls]
-Documentation = "https://aramis-lab.github.io/pydra-freesurfer"
-Issues = "https://github.com/aramis-lab/pydra-freesurfer/issues"
-Repository = "https://github.com/aramis-lab/pydra-freesurfer"
+Documentation = "https://aramis-lab.github.io/clinica-pydra-freesurfer"
+Issues = "https://github.com/aramis-lab/clinica-pydra-freesurfer/issues"
+Repository = "https://github.com/aramis-lab/clinica-pydra-freesurfer"
 
-[tool.codespell]
-quiet-level = 3
+[tool.hatch.build.targets.wheel]
+only-include = ["src/pydra/tasks/freesurfer"]
+sources = ["src"]
+
+[tool.hatch.envs.default]
+dependencies = ["pytest"]
+[tool.hatch.envs.default.scripts]
+test = "pytest {args}"
+
+[[tool.hatch.envs.default.matrix]]
+python = ["3.8", "3.9", "3.10", "3.11", "3.12"]
+
+[tool.hatch.envs.docs]
+template = "docs"
+dependencies = [
+  "pydata-sphinx-theme >=0.13",
+  "sphinx <7",
+  "sphinx-autobuild",
+  "sphinx-pyproject",
+]
+[tool.hatch.envs.docs.scripts]
+build = "sphinx-build docs docs/_build/html -b {args:html}"
+serve = "sphinx-autobuild docs docs/_build/html {args}"
 
 [tool.pytest.ini_options]
 minversion = "6.0"