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New caps dataset#562

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HuguesRoy wants to merge 41 commits intoaramis-lab:refactoringaramis-lab/clinicadl:refactoringfrom HuguesRoy:caps_datasetHuguesRoy/clinicadl:caps_datasetCopy head branch name to clipboard

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Commits on Apr 22, 2024

• Bump sqlparse from 0.4.4 to 0.5.0 (aramis-lab#558)

  Show description for a9a23b9
  dependabot[bot]

  authored
  a9a23b9

• concatenation and stacking of capsdatasets +creation from control file

  HuguesRoy

  committed
  5e52ca8

• low level caps dataset class (CapsDatasetImage)

  HuguesRoy

  committed
  d56f705

• reformat

  HuguesRoy

  committed
  1b111d1

• reformat

  HuguesRoy

  committed
  4969368

Commits on Apr 23, 2024

• Typing

  HuguesRoy

  committed
  d7c1fba

• typing : fench to english...

  HuguesRoy

  committed
  84811a4

Commits on Apr 24, 2024

• compatibility for patch,roi and slices

  HuguesRoy

  committed
  e4875cd

• Dataloader for paired and unpaired datasets

  HuguesRoy

  committed
  adfc233

• Update clinicadl/utils/caps_dataset/caps_dataset_refactoring/caps_dataset.py

  Show description for d28a50a
  

  HuguesRoy

  and

  NicolasGensollen

  authored
  d28a50a

• Update clinicadl/utils/caps_dataset/caps_dataset_refactoring/caps_dataset.py

  Show description for 3b9e4dc
  

  HuguesRoy

  and

  thibaultdvx

  authored
  3b9e4dc

• Update clinicadl/utils/caps_dataset/caps_dataset_refactoring/caps_dataset.py

  Show description for c5f27ee
  

  HuguesRoy

  and

  NicolasGensollen

  authored
  c5f27ee

Commits on May 4, 2024

• Bump tqdm from 4.66.1 to 4.66.3 (aramis-lab#569)

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  dependabot[bot]

  authored
  36eb46f

Commits on May 7, 2024

• Bump werkzeug from 3.0.1 to 3.0.3 (aramis-lab#570)

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  dependabot[bot]

  authored
  fa7f0f1

• Bump jinja2 from 3.1.3 to 3.1.4 (aramis-lab#571)

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  dependabot[bot]

  authored
  a05fcd5

Commits on May 15, 2024

• Update concat_dataset.py

  Show description for 76fc265
  HuguesRoy

  authored
  76fc265

Commits on May 17, 2024

• Bump mlflow from 2.10.1 to 2.12.1 (aramis-lab#575)

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  dependabot[bot]

  authored
  b2fc3e6

• Bump gunicorn from 21.2.0 to 22.0.0 (aramis-lab#576)

  Show description for 495d5b9
  dependabot[bot]

  authored
  495d5b9

Commits on May 21, 2024

• Bump requests from 2.31.0 to 2.32.0 (aramis-lab#578)

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  dependabot[bot]

  authored
  bdd102a

Commits on May 22, 2024

• [CI] Run tests through GitHub Actions (aramis-lab#573)

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  NicolasGensollen

  authored
  beccd4c

Commits on May 23, 2024

• [CI] Skip tests when PR is in draft mode (aramis-lab#592)

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  NicolasGensollen

  authored
  2861e9d

• [CI] Test train workflow on GPU machine (aramis-lab#590)

  Show description for f5de251
  NicolasGensollen

  authored
  f5de251

• [CI] Port remaining GPU tests to GitHub Actions (aramis-lab#593)

  Show description for 69b3538
  NicolasGensollen

  authored
  69b3538

Commits on May 24, 2024

• [CI] Remove GPU pipeline from Jenkinsfile (aramis-lab#594)

  NicolasGensollen

  authored
  c9d9252

• [CI] Port remaining non GPU tests to GitHub Actions (aramis-lab#581)

  Show description for 753f04e
  NicolasGensollen

  authored
  753f04e

• [CI] Remove jenkins related things (aramis-lab#595)

  NicolasGensollen

  authored
  c424d77

Commits on May 30, 2024

• Add flags to run CI tests locally (aramis-lab#596)

  thibaultdvx

  authored
  52d7561

• [CI] Remove duplicated verbose flag in test pipelines (aramis-lab#598)

  NicolasGensollen

  authored
  39d22fd

• [DOC] Update the Python version used for creating the conda environment in README (aramis-lab#600)

  Show description for 571662c
  NicolasGensollen

  authored
  571662c

Commits on May 31, 2024

• Flag for local tests (aramis-lab#608)

  Show description for d54d59c
  thibaultdvx

  authored
  d54d59c

Commits on Jun 4, 2024

• Update quality_check.py (aramis-lab#609)

  Show description for f20e7fb
  HuguesRoy

  authored
  f20e7fb

• Fix issue in compare_folders (aramis-lab#610)

  Show description for f6f382a
  thibaultdvx

  authored
  f6f382a

• [INFRA] Update the Makefile check.lock target (aramis-lab#603)

  NicolasGensollen

  authored
  52f9492

Commits on Jun 7, 2024

• [CI] Run unit tests and linter on refactoring branch (aramis-lab#618)

  Show description for 996cdd5
  NicolasGensollen

  authored
  996cdd5

Commits on Jun 12, 2024

• Trigger tests when undrafted (aramis-lab#623)

  Show description for d0d5cd2
  thibaultdvx

  authored
  d0d5cd2

Commits on Jun 18, 2024

• Bump urllib3 from 1.26.18 to 1.26.19 (aramis-lab#625)

  Show description for dca3802
  dependabot[bot]

  authored
  dca3802

Commits on Jul 8, 2024

• Bump certifi from 2024.2.2 to 2024.7.4 (aramis-lab#634)

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  dependabot[bot]

  authored
  b8d402b

Commits on Jul 10, 2024

• Bump zipp from 3.17.0 to 3.19.1 (aramis-lab#635)

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  dependabot[bot]

  authored
  6dc2956

Commits on Jul 16, 2024

• Bump setuptools from 69.0.3 to 70.0.0 (aramis-lab#636)

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  dependabot[bot]

  authored
  b30aac8

Commits on Jul 19, 2024

• Bump sentry-sdk from 1.40.1 to 2.8.0 (aramis-lab#638)

  Show description for f6d3f25
  dependabot[bot]

  authored
  f6d3f25

Commits on Jul 31, 2024

• Merge branch 'hr_caps_dataset' into caps_dataset

  camillebrianceau

  authored
  94d81e3