Clinicadl models #639
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Clinicadl models #639
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Bumps [sqlparse](https://github.com/andialbrecht/sqlparse) from 0.4.4 to 0.5.0. - [Changelog](https://github.com/andialbrecht/sqlparse/blob/master/CHANGELOG) - [Commits](andialbrecht/sqlparse@0.4.4...0.5.0) --- updated-dependencies: - dependency-name: sqlparse dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.66.1 to 4.66.3. - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](tqdm/tqdm@v4.66.1...v4.66.3) --- updated-dependencies: - dependency-name: tqdm dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [werkzeug](https://github.com/pallets/werkzeug) from 3.0.1 to 3.0.3. - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@3.0.1...3.0.3) --- updated-dependencies: - dependency-name: werkzeug dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4. - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.1.3...3.1.4) --- updated-dependencies: - dependency-name: jinja2 dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [mlflow](https://github.com/mlflow/mlflow) from 2.10.1 to 2.12.1. - [Release notes](https://github.com/mlflow/mlflow/releases) - [Changelog](https://github.com/mlflow/mlflow/blob/master/CHANGELOG.md) - [Commits](mlflow/mlflow@v2.10.1...v2.12.1) --- updated-dependencies: - dependency-name: mlflow dependency-type: direct:development ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [gunicorn](https://github.com/benoitc/gunicorn) from 21.2.0 to 22.0.0. - [Release notes](https://github.com/benoitc/gunicorn/releases) - [Commits](benoitc/gunicorn@21.2.0...22.0.0) --- updated-dependencies: - dependency-name: gunicorn dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
updated-dependencies: - dependency-name: requests dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* try a simple workflow first * try running on new ubuntu VM * fixes * bump poetry version to 1.8.3 * try removing caching.. * add workflow for testing tsv tools
* try skipping test_tsvtools when PR is in draft mode * trigger CI * add a cpu tag to avoid running cpu tests on gpu machines * run also on refactoring branch
* add test workflow on GPU for train * fix conda path * fix conflicting workdir * only run on non-draft PRs * run also on refactoring branch
* add workflow for testing interpretation task * add workflow for testing random search task * add workflow for testing resume task * add workflow for testing transfer learning task * trigger CI * trigger CI
* add cleaning step to test_tsvtools pipeline * add test_generate pipeline * add test_predict pipeline * add test_prepare_data pipeline * add test_quality_checks pipeline * add refactoring target branch, cpu tag, and draft PR filter * trigger CI
…nt in README (aramis-lab#600) * update python version used for creating conda env in README * investigate * fix
* add no-gpu and adapt-base-dir flag
* Update quality_check.py
* add FileNotFound error in tree
…into refactoring
* run unit tests on refactoring * run linter on refactoring
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This PR aims to initiate the refactoring of the network module. In this PR, I gathered all the code that concern PyTorch's
nn.Moduleand reorganize it inlayers,blocksandnetworks. So, there is nothing new in this PR, only some cleaning. I also added unittests to test all those architectures.As decided during the last developper meeting, those architectures will be removed, so I didn't find it relevant to link them to the rest of
clinicadl. That's why the foldernnis completely independent of the rest of the software, ready to be removed.