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New metrics module based on MONAI #654

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merged 12 commits into from
Sep 24, 2024

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thibaultdvx
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This PR creates a module to get the metrics implemented in MONAI, on the same model than #647. The following metrics would be supported (see https://docs.monai.io/en/stable/metrics.html):

  • Classification:

    • Confusion Matrix related (precision, f1 score, etc.)
    • ROC AUC
  • Regression

    • MAE
    • MSE
    • RMSE
    • PSNR
  • Reconstruction

    • SSIM
    • Multi-scale SSIM
    • regression metrics above
  • Segmentation

    • Dice
    • Generalized Dice
    • IoU
    • Surface distance
    • Hausdorff distance
    • Surface dice
  • Generation

    • MMD

I'm waiting for R2 score and Average Precision to be implemented in MONAI.


Waiting for previous PRs to be merged to rebase.

@thibaultdvx thibaultdvx added the refactoring ClinicaDL refactoring 2024 label Sep 19, 2024
This was referenced Sep 19, 2024
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@camillebrianceau camillebrianceau left a comment

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LGTM !

@thibaultdvx thibaultdvx merged commit 17ef236 into aramis-lab:refactoring Sep 24, 2024
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2 participants