New DataType module #695
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New DataType module #695
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Bumps [sqlparse](https://github.com/andialbrecht/sqlparse) from 0.4.4 to 0.5.0. - [Changelog](https://github.com/andialbrecht/sqlparse/blob/master/CHANGELOG) - [Commits](andialbrecht/sqlparse@0.4.4...0.5.0) --- updated-dependencies: - dependency-name: sqlparse dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [mlflow](https://github.com/mlflow/mlflow) from 2.10.1 to 2.12.1. - [Release notes](https://github.com/mlflow/mlflow/releases) - [Changelog](https://github.com/mlflow/mlflow/blob/master/CHANGELOG.md) - [Commits](mlflow/mlflow@v2.10.1...v2.12.1) --- updated-dependencies: - dependency-name: mlflow dependency-type: direct:development ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [gunicorn](https://github.com/benoitc/gunicorn) from 21.2.0 to 22.0.0. - [Release notes](https://github.com/benoitc/gunicorn/releases) - [Commits](benoitc/gunicorn@21.2.0...22.0.0) --- updated-dependencies: - dependency-name: gunicorn dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* try a simple workflow first * try running on new ubuntu VM * fixes * bump poetry version to 1.8.3 * try removing caching.. * add workflow for testing tsv tools
* try skipping test_tsvtools when PR is in draft mode * trigger CI * add a cpu tag to avoid running cpu tests on gpu machines * run also on refactoring branch
Bumps [certifi](https://github.com/certifi/python-certifi) from 2024.2.2 to 2024.7.4. - [Commits](certifi/python-certifi@2024.02.02...2024.07.04) --- updated-dependencies: - dependency-name: certifi dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* drop python 3.8 * do not recommend Python 3.8 in docs * do not test with python 3.8 * update requests * bump python version in environment.yml
* support Python 3.12 * run unit tests on Python 3.12 * update dependencies to be compatible with 3.12 * bump torch * use np.prod instead of np.product which was removed in Numpy 2
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Summary of Changes:
data.datatypewith three submodules (modalities,preprocessing, andraw). This will help differentiate:Architecture Overview:
This architecture is a beginning and a pre-module, but it will later be replaced with ClinicaIO. The goal is to structure the data management system around different concepts, such as ImageModality, RawData, and Preprocessing, and provide clear mappings between them.
I am not entirely sure that the architecture and the names are the best, so feel free to suggest any changes and give feedback!