ClinicaDL v1.4.0

Fixed

• Fix --diagnoses and --merged_tsv option bug in clinicadl get-labels
• Fix Pathlib bugs
• Fix get_tsv_paths function bug.
• Fix a bug for which it was impossible to use predict without specifying the splits and selection metrics.

Changed

• Changed default batch size to 8 for clinicadl predict
• Changed VAEs main class

New

• Add --n_proc option in clinicadl generate pipelines for parallelization.
• Add --split to clinicadl predict
• Add new VAE networks.
• Add pytorch function to summarize
• Add --size_reduction and --size_reduction_factor options to clinicadl train, clinicadl predict and clinicadl interpret.
• Add SSIM2D, SSIM3D metrics for VAE.
• Add --save_latent_space option to clinicadl train and clinicadl predict.
• Add clinicadl generate trvial_motion
• Add Data augmentation with torchio