Added the tutorial of convert pseudotime to RNA velocity (#706)

aristoteleo · Oct 29, 2024 · db2a0c4 · db2a0c4
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diff --git a/docs/tutorials/index_conventional.md b/docs/tutorials/index_conventional.md
@@ -4,6 +4,7 @@
 :maxdepth: 1
 
 notebooks/zebrafish
+notebooks/dynamo_beyondvelo
 notebooks/zebrafish_topography_analysis_tutorial
 
 ```
diff --git a/docs/tutorials/notebooks b/docs/tutorials/notebooks
diff --git a/dynamo/sample_data.py b/dynamo/sample_data.py
@@ -145,6 +145,17 @@ def DentateGyrus(
 
     return adata
 
+def bone_marrow(
+    url: str = "https://figshare.com/ndownloader/files/35826944",
+    filename: str = "bone_marrow.h5ad",
+) -> AnnData:
+    """The bone marrow dataset used in
+
+    This data consists of 27,876 genes across 5,780 cells.
+    """
+    adata = get_adata(url, filename)
+
+    return adata
 
 def Haber(
     url: str = "http://pklab.med.harvard.edu/velocyto/Haber_et_al/Haber_et_al.loom",