Add two tests for selecting transition_genes in tl.cell_velocities #638
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR currently just adds two tests, one were running
tl.cell_velocities
works and one were selecting fortransition_genes
fails. From trying to debug it, I would say that there is some unintended interplay ofdynamics_genes
andtransition_genes
which results in incompatible array shapes in different places.Furthermore, the documentation of
transition_matrix
intl.cell_velocities
seems to be off.