Upgrade dependencies

* Upgrade Python requirements
* Upgrade pre-commit dependencies
* Update git submodules

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.6.0
+  rev: v5.0.0
   hooks:
   - id: pretty-format-json
     args: [--no-ensure-ascii, --autofix]
@@ -10,7 +10,7 @@ repos:
         src/(MCPClient/MCPServer|dashboard)/install/.*\.json
       )
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.6.6
+  rev: v0.6.9
   hooks:
   - id: ruff
     args: [--fix, --exit-non-zero-on-fix]
@@ -21,7 +21,7 @@ repos:
   - id: django-upgrade
     args: [--target-version, "4.2"]
 - repo: https://github.com/igorshubovych/markdownlint-cli
-  rev: v0.41.0
+  rev: v0.42.0
   hooks:
   - id: markdownlint
     exclude: |

requirements-dev.txt

@@ -23,7 +23,7 @@ bagit @ git+https://github.com/artefactual-labs/bagit-python.git@902051d8410219f
     # via -r requirements.txt
 brotli==1.1.0
     # via -r requirements.txt
-build==1.2.2
+build==1.2.2.post1
     # via pip-tools
 cachetools==5.5.0
     # via tox
@@ -203,7 +203,7 @@ pyopenssl==24.2.1
     #   josepy
 pyproject-api==1.8.0
     # via tox
-pyproject-hooks==1.1.0
+pyproject-hooks==1.2.0
     # via
     #   build
     #   pip-tools
@@ -278,21 +278,22 @@ sqlparse==0.5.1
     #   django
 text-unidecode==1.3
     # via python-slugify
-tomli==2.0.1
+tomli==2.0.2
     # via
     #   build
     #   coverage
     #   pip-tools
     #   pyproject-api
     #   pytest
     #   tox
-tox==4.20.0
+tox==4.21.2
     # via -r requirements-dev.in
 typing-extensions==4.12.2
     # via
     #   -r requirements.txt
     #   asgiref
     #   pyee
+    #   tox
 unidecode==1.3.8
     # via -r requirements.txt
 urllib3==2.2.3
@@ -301,7 +302,7 @@ urllib3==2.2.3
     #   amclient
     #   elasticsearch
     #   requests
-virtualenv==20.26.5
+virtualenv==20.26.6
     # via tox
 wheel==0.44.0
     # via pip-tools