Update composer deps and update php-cs-fixer conf

Update composer dependencies:
- jasig/phpcas is no longer maintained. apereo/phpcas is the suggested
  replacement.
- Updating to php-cs-fixer 3.64.0 introduces some new rules which would
  lead to changes in over ~400 files. Selectively changing or turning
  off some of these rules that would lead to problems.

.php-cs-fixer.dist.php

@@ -1,28 +1,71 @@
 <?php
 
-// Exclude cache folder (vendor is already excluded)
+// Exclude cache and docker folders (vendor is already excluded)
 // and model classes generated with Propel.
 $finder = PhpCsFixer\Finder::create()
     ->exclude('.coverage')
     ->exclude('cache')
+    ->notPath('docker/')
     ->notPath('#/model/om/#')
     ->notPath('#/model/map/#')
     ->in(__DIR__)
 ;
 
-// Indentation inside switch blocks and some multiline
-// elements (control statements, assignments, strings)
-// is not considered. See:
-// https://github.com/FriendsOfPHP/PHP-CS-Fixer/issues/776
-// https://github.com/FriendsOfPHP/PHP-CS-Fixer/issues/4502
-//
-// PhpCsFixer's method_argument_space default value,
-// which includes ensure_fully_multiline, causes
-// inconsistencies in templates.
+// method_argument_space, statement_indentation
+/*
+ * Indentation inside switch blocks and some multiline
+ * elements (control statements, assignments, strings)
+ * is not considered. See:
+ * https://github.com/FriendsOfPHP/PHP-CS-Fixer/issues/776
+ * https://github.com/FriendsOfPHP/PHP-CS-Fixer/issues/4502
+ *
+ * PhpCsFixer's method_argument_space default value,
+ * which includes ensure_fully_multiline, causes
+ * inconsistencies in templates.
+ */
+
+// fully_qualified_strict_types
+/*
+ * TODO: Currently the only cases where we don't have fully
+ * qualified strict types is where we reference Elastica,
+ * and having those helps developers quickly find locations
+ * where Elastica is present in the AtoM codebase outside
+ * plugins. When ES is no longer deeply integrated with the
+ * AtoM code base, this rule exception can be removed.
+ */
+
+// string_implicit_backslashes
+/*
+ * This breaks regex strings, and currently there are no
+ * options that distinguish regex strings from regular
+ * strings.
+ */
+
+// no_superfluous_phpdoc_tags
+/*
+ * This removes phpdoc where the function signature already
+ * includes types. Adding this exception since we still
+ * want to retain phpdoc specially if they include a
+ * description.
+ */
+
+// multiline_whitespace_before_semicolons
+/*
+ * This prevents semicolons to be moved to a new line in
+ * cases where there are chained multiline function calls.
+ * Adding this exception since the semicolons in new lines
+ * are not indented.
+ */
 return (new PhpCsFixer\Config())
+    ->setParallelConfig(PhpCsFixer\Runner\Parallel\ParallelConfigFactory::detect())
     ->setRules([
         '@PhpCsFixer' => true,
         'method_argument_space' => ['on_multiline' => 'ignore'],
+        'statement_indentation' => false,
+        'fully_qualified_strict_types' => false,
+        'string_implicit_backslashes' => false,
+        'multiline_whitespace_before_semicolons' => ['strategy' => 'no_multi_line'],
+        'no_superfluous_phpdoc_tags' => false,
     ])
     ->setFinder($finder)
 ;

apps/qubit/modules/actor/templates/_actions.php

@@ -2,7 +2,7 @@
 
   <ul>
 
-    <?php if (QubitAcl::check($resource, 'update') || (QubitAcl::check($resource, 'translate'))) { ?>
+    <?php if (QubitAcl::check($resource, 'update') || QubitAcl::check($resource, 'translate')) { ?>
       <li><?php echo link_to(__('Edit'), [$resource, 'module' => 'actor', 'action' => 'edit'], ['class' => 'c-btn c-btn-submit', 'title' => __('Edit')]); ?></li>
     <?php } ?>
 

apps/qubit/modules/actor/templates/_occupations.php

@@ -10,7 +10,8 @@
     </tr>
   </thead><tbody>
 
-    <?php $i = 0; foreach ($occupations as $item) { ?>
+    <?php $i = 0;
+    foreach ($occupations as $item) { ?>
       <?php $form->getWidgetSchema()->setNameFormat("occupations[{$i}][%s]"); ?>
 
       <tr class="<?php echo 0 == $i % 2 ? 'even' : 'odd'; ?> related_obj_<?php echo $item->id; ?>">

apps/qubit/modules/admin/actions/error404Action.class.php

@@ -19,7 +19,5 @@
 
 class AdminError404Action extends sfAction
 {
-    public function execute($request)
-    {
-    }
+    public function execute($request) {}
 }

apps/qubit/modules/admin/actions/translatePermissionAction.class.php

@@ -19,7 +19,5 @@
 
 class AdminTranslatePermissionAction extends sfAction
 {
-    public function execute($request)
-    {
-    }
+    public function execute($request) {}
 }

apps/qubit/modules/clipboard/actions/exportAction.class.php

@@ -83,11 +83,11 @@ public function execute($request)
 
         // Determine if there are non-visible elements that should be hidden
         $this->nonVisibleElementsIncluded = false;
-        $defTemplate = sfConfig::get(('app_default_template_'.strtolower($this->objectType)));
+        $defTemplate = sfConfig::get('app_default_template_'.strtolower($this->objectType));
 
         foreach (sfConfig::getAll() as $setting => $value) {
             if (
-                (false !== strpos($setting, ('app_element_visibility_'.$defTemplate)))
+                (false !== strpos($setting, 'app_element_visibility_'.$defTemplate))
                 && (0 == sfConfig::get($setting))
             ) {
                 $this->nonVisibleElementsIncluded = true;
@@ -338,6 +338,7 @@ protected function addField($name)
                 );
 
                 break;
+
             // Enable field includeDescendants if:
             // options enabled
             // and, information object type
@@ -357,6 +358,7 @@ protected function addField($name)
                 }
 
                 break;
+
             // Enable field includeAllLevels if:
             // options enabled
             // and, information object type
@@ -372,6 +374,7 @@ protected function addField($name)
                 }
 
                 break;
+
             // Enable field levels if:
             // options enabled
             // and, information object type
@@ -405,6 +408,7 @@ protected function addField($name)
                 }
 
                 break;
+
             // Enable field includeDigitalObjects if:
             // digital objects are available
             case 'includeDigitalObjects':
@@ -429,6 +433,7 @@ protected function addField($name)
                 }
 
                 break;
+
             // Enable field includeDrafts if:
             // information object type
             // and, user is authenticated
@@ -451,6 +456,7 @@ protected function addField($name)
                 }
 
                 break;
+
             // Enable field includeNonVisibleElements if:
             // information object type
             // and, user is authenticated

apps/qubit/modules/clipboard/actions/viewAction.class.php

@@ -124,6 +124,7 @@ private function setESSort($request)
                 $this->search->query->addSort(['referenceCode.untouched' => $request->sortDir]);
 
                 break;
+
             // Sort by title if information object, go with authorized form of name if repository / actor
             case 'alphabetic':
                 $fieldName = 'QubitInformationObject' === $this->entityType ? 'title' : 'authorizedFormOfName';

apps/qubit/modules/default/actions/fullTreeViewAction.class.php

@@ -176,8 +176,7 @@ protected function doElasticsearchQuery($term, $options = [])
         return QubitSearch::getInstance()
             ->index
             ->getType('QubitInformationObject')
-            ->search($query->getQuery(false, false))
-        ;
+            ->search($query->getQuery(false, false));
     }
 
     /**
@@ -239,8 +238,7 @@ protected function countChildren($id, $options = [])
         return QubitSearch::getInstance()
             ->index
             ->getType('QubitInformationObject')
-            ->count($query->getQuery(false, false))
-        ;
+            ->count($query->getQuery(false, false));
     }
 
     /**

apps/qubit/modules/digitalobject/actions/editRepresentationComponent.class.php

@@ -24,7 +24,5 @@
  */
 class DigitalObjectEditRepresentationComponent extends sfComponent
 {
-    public function execute($request)
-    {
-    }
+    public function execute($request) {}
 }

apps/qubit/modules/digitalobject/actions/imageflowComponent.class.php

@@ -126,8 +126,7 @@ protected function getDescendantDigitalObjectCount()
         $results = QubitSearch::getInstance()
             ->index
             ->getType('QubitInformationObject')
-            ->search($search->getQuery(false, true))
-        ;
+            ->search($search->getQuery(false, true));
 
         return $results->getTotalHits();
     }

apps/qubit/modules/digitalobject/actions/metadataComponent.class.php

@@ -206,8 +206,7 @@ protected function setMasterFileShowProperties()
             || $this->showMasterFileMediaType
             || $this->showMasterFileMimeType
             || $this->showMasterFileSize
-            || $this->showMasterFileCreatedAt
-        ;
+            || $this->showMasterFileCreatedAt;
     }
 
     protected function setReferenceCopyShowProperties()
@@ -320,9 +319,8 @@ protected function setOriginalFileShowProperties()
             check_field_visibility('app_element_visibility_digital_object_preservation_system_original_ingested')
             && !$this->isEmpty($this->originalFileIngestedAt)
         );
-        $this->showOriginalFilePermissions = (
-            check_field_visibility('app_element_visibility_digital_object_preservation_system_original_permissions')
-        );
+        $this->showOriginalFilePermissions =
+            check_field_visibility('app_element_visibility_digital_object_preservation_system_original_permissions');
 
         return $this->showOriginalFileName
             || $this->showOriginalFormatName
@@ -351,9 +349,8 @@ protected function setPreservationCopyShowProperties()
             check_field_visibility('app_element_visibility_digital_object_preservation_system_preservation_normalized')
             && !$this->isEmpty($this->preservationCopyNormalizedAt)
         );
-        $this->showPreservationCopyPermissions = (
-            check_field_visibility('app_element_visibility_digital_object_preservation_system_preservation_permissions')
-        );
+        $this->showPreservationCopyPermissions =
+            check_field_visibility('app_element_visibility_digital_object_preservation_system_preservation_permissions');
 
         return $this->showPreservationCopyFileName
             || $this->showPreservationCopyFileSize

apps/qubit/modules/function/actions/browseAction.class.php

@@ -73,6 +73,7 @@ public function execute($request)
         switch ($request->sort) {
             case 'identifier':
                 $criteria->{$sortFunction}(QubitFunctionObject::DESCRIPTION_IDENTIFIER);
+
                 // And then back to authorized form of name
                 // no break
             case 'alphabetic':

apps/qubit/modules/informationobject/actions/calculateDatesAction.class.php

@@ -92,7 +92,7 @@ public static function getDescendantDateTypes($resource)
 
         foreach ($eventData as $event) {
             $eventTypeTerm = QubitTerm::getById($event['type_id']);
-            $eventTypes[($event['type_id'])] = $eventTypeTerm->getName(['cultureFallback' => true]);
+            $eventTypes[$event['type_id']] = $eventTypeTerm->getName(['cultureFallback' => true]);
         }
 
         return $eventTypes;

apps/qubit/modules/informationobject/actions/findingAidComponent.class.php

@@ -131,6 +131,7 @@ public function execute($request)
                     $this->status = $this->context->i18n->__('Uploaded');
 
                     break;
+
                 // It should never get here if we don't add more finding aid
                 // statuses
                 default:

apps/qubit/modules/informationobject/actions/inventoryAction.class.php

@@ -162,6 +162,7 @@ private static function getResults($resource, $limit = 10, $page = 1, $sort = nu
                 ]);
 
                 break;
+
             // Avoid sorting when we are just counting records
             case null:
                 break;

apps/qubit/modules/informationobject/templates/_actions.php

@@ -1,7 +1,7 @@
 <section class="actions">
   <ul>
 
-      <?php if (QubitAcl::check($resource, 'update') || (QubitAcl::check($resource, 'translate'))) { ?>
+      <?php if (QubitAcl::check($resource, 'update') || QubitAcl::check($resource, 'translate')) { ?>
         <li><?php echo link_to(__('Edit'), [$resource, 'module' => 'informationobject', 'action' => 'edit'], ['class' => 'c-btn c-btn-submit']); ?></li>
       <?php } ?>
 
@@ -63,9 +63,9 @@
 
               <li class="divider"></li>
 
-              <li><?php echo link_to(__('Create new rights'), [$resource,  'sf_route' => 'slug/default', 'module' => 'right', 'action' => 'edit']); ?></li>
+              <li><?php echo link_to(__('Create new rights'), [$resource, 'sf_route' => 'slug/default', 'module' => 'right', 'action' => 'edit']); ?></li>
               <?php if ($resource->hasChildren()) { ?>
-                <li><?php echo link_to(__('Manage rights inheritance'), [$resource,  'sf_route' => 'slug/default', 'module' => 'right', 'action' => 'manage']); ?></li>
+                <li><?php echo link_to(__('Manage rights inheritance'), [$resource, 'sf_route' => 'slug/default', 'module' => 'right', 'action' => 'manage']); ?></li>
               <?php } ?>
 
               <?php if (sfConfig::get('app_audit_log_enabled', false)) { ?>

apps/qubit/modules/informationobject/templates/_alternativeIdentifiers.php

@@ -13,7 +13,8 @@
       </tr>
     </thead><tbody>
 
-      <?php $i = 0; foreach ($alternativeIdentifiers as $item) { ?>
+      <?php $i = 0;
+      foreach ($alternativeIdentifiers as $item) { ?>
         <?php $form->getWidgetSchema()->setNameFormat("alternativeIdentifiers[{$i}][%s]"); ?>
 
         <tr class="<?php echo 0 == $i % 2 ? 'even' : 'odd'; ?> related_obj_<?php echo $item->id; ?>">

apps/qubit/modules/informationobject/templates/boxLabelSuccess.php

@@ -37,7 +37,8 @@
         </th>
       </tr>
     </thead><tbody>
-      <?php $row = 1; foreach ($results as $item) { ?>
+      <?php $row = 1;
+      foreach ($results as $item) { ?>
         <tr>
           <td>
             <?php echo $row++; ?>

apps/qubit/modules/informationobject/templates/itemOrFileListSuccess.php

@@ -17,7 +17,8 @@
 <body>
   <h1 class="label"><?php echo $reportTypeLabel.$this->i18n->__(' report'); ?></h1><hr>
 
-  <?php $row = 1; foreach ($results as $parent => $items) { ?>
+  <?php $row = 1;
+  foreach ($results as $parent => $items) { ?>
     <h2 class="element-invisible"><?php echo $this->i18n->__('%1% hierarchy', ['%1%' => sfConfig::get('app_ui_label_informationobject')]); ?></h2>
     <div class="resource-hierarchy">
       <ul>

apps/qubit/modules/informationobject/templates/storageLocationsSuccess.php

@@ -35,7 +35,8 @@
         </th>
       </tr>
     </thead><tbody>
-      <?php $row = 1; foreach ($results as $item) { ?>
+      <?php $row = 1;
+      foreach ($results as $item) { ?>
         <tr>
           <td>
             <?php echo $row++; ?>

apps/qubit/modules/menu/templates/listSuccess.php

@@ -23,7 +23,7 @@
         <tr>
           <td<?php if (QubitMenu::ROOT_ID == $item['parentId']) { ?> style="font-weight: bold"<?php } ?>>
 
-            <?php echo str_repeat('&nbsp;&nbsp;', ($item['depth'] - 1)); ?>
+            <?php echo str_repeat('&nbsp;&nbsp;', $item['depth'] - 1); ?>
 
             <?php if (isset($item['prev'])) { ?>
               <?php echo link_to(image_tag('up.gif', ['alt' => __('Move up')]), ['module' => 'menu', 'action' => 'list', 'move' => $item['id'], 'before' => $item['prev']], ['title' => __('Move item up in list')]); ?>

apps/qubit/modules/object/actions/validateCsvAction.class.php

@@ -52,9 +52,7 @@ protected function addField($name)
         return parent::addField($name);
     }
 
-    protected function processField($field)
-    {
-    }
+    protected function processField($field) {}
 
     /**
      * Launch the file import background job and return.

apps/qubit/modules/object/templates/_notes.php

@@ -19,7 +19,8 @@
       </tr>
     </thead><tbody>
 
-      <?php $i = 0; foreach ($notes as $item) { ?>
+      <?php $i = 0;
+      foreach ($notes as $item) { ?>
 
         <?php $form->getWidgetSchema()->setNameFormat($arrayName."[{$i}][%s]"); ?>
 

apps/qubit/modules/physicalobject/actions/browseAction.class.php

@@ -29,7 +29,7 @@ public function execute($request)
         }
 
         if (sfConfig::get('app_enable_institutional_scoping')) {
-            //remove search-realm
+            // remove search-realm
             $this->context->user->removeAttribute('search-realm');
         }