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Add primers in fasta format, and add primer pairs file #21

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392 changes: 392 additions & 0 deletions primer_schemes/nCoV-2019/V1/nCoV-2019.primers.fasta
Original file line number Diff line number Diff line change
@@ -0,0 +1,392 @@
>nCoV-2019_10_LEFT
TGAGAAGTGCTCTGCCTATACAGT
>nCoV-2019_10_RIGHT
TCATCTAACCAATCTTCTTCTTGCTCT
>nCoV-2019_11_LEFT
GGAATTTGGTGCCACTTCTGCT
>nCoV-2019_11_RIGHT
TCATCAGATTCAACTTGCATGGCA
>nCoV-2019_12_LEFT
AAACATGGAGGAGGTGTTGCAG
>nCoV-2019_12_RIGHT
TTCACTCTTCATTTCCAAAAAGCTTGA
>nCoV-2019_13_LEFT
TCGCACAAATGTCTACTTAGCTGT
>nCoV-2019_13_RIGHT
ACCACAGCAGTTAAAACACCCT
>nCoV-2019_14_LEFT
CATCCAGATTCTGCCACTCTTGT
>nCoV-2019_14_RIGHT
AGTTTCCACACAGACAGGCATT
>nCoV-2019_15_LEFT
ACAGTGCTTAAAAAGTGTAAAAGTGCC
>nCoV-2019_15_RIGHT
AACAGAAACTGTAGCTGGCACT
>nCoV-2019_16_LEFT
AATTTGGAAGAAGCTGCTCGGT
>nCoV-2019_16_RIGHT
CACAACTTGCGTGTGGAGGTTA
>nCoV-2019_17_LEFT
CTTCTTTCTTTGAGAGAAGTGAGGACT
>nCoV-2019_17_RIGHT
TTTGTTGGAGTGTTAACAATGCAGT
>nCoV-2019_18_LEFT
TGGAAATACCCACAAGTTAATGGTTTAAC
>nCoV-2019_18_RIGHT
AGCTTGTTTACCACACGTACAAGG
>nCoV-2019_19_LEFT
GCTGTTATGTACATGGGCACACT
>nCoV-2019_19_RIGHT
TGTCCAACTTAGGGTCAATTTCTGT
>nCoV-2019_1_LEFT
ACCAACCAACTTTCGATCTCTTGT
>nCoV-2019_1_RIGHT
CATCTTTAAGATGTTGACGTGCCTC
>nCoV-2019_20_LEFT
ACAAAGAAAACAGTTACACAACAACCA
>nCoV-2019_20_RIGHT
ACGTGGCTTTATTAGTTGCATTGTT
>nCoV-2019_21_LEFT
TGGCTATTGATTATAAACACTACACACCC
>nCoV-2019_21_RIGHT
TAGATCTGTGTGGCCAACCTCT
>nCoV-2019_22_LEFT
ACTACCGAAGTTGTAGGAGACATTATACT
>nCoV-2019_22_RIGHT
ACAGTATTCTTTGCTATAGTAGTCGGC
>nCoV-2019_23_LEFT
ACAACTACTAACATAGTTACACGGTGT
>nCoV-2019_23_RIGHT
ACCAGTACAGTAGGTTGCAATAGTG
>nCoV-2019_24_LEFT
AGGCATGCCTTCTTACTGTACTG
>nCoV-2019_24_RIGHT
ACATTCTAACCATAGCTGAAATCGGG
>nCoV-2019_25_LEFT
GCAATTGTTTTTCAGCTATTTTGCAGT
>nCoV-2019_25_RIGHT
ACTGTAGTGACAAGTCTCTCGCA
>nCoV-2019_26_LEFT
TTGTGATACATTCTGTGCTGGTAGT
>nCoV-2019_26_RIGHT
TCCGCACTATCACCAACATCAG
>nCoV-2019_27_LEFT
ACTACAGTCAGCTTATGTGTCAACC
>nCoV-2019_27_RIGHT
AATACAAGCACCAAGGTCACGG
>nCoV-2019_28_LEFT
ACATAGAAGTTACTGGCGATAGTTGT
>nCoV-2019_28_RIGHT
TGTTTAGACATGACATGAACAGGTGT
>nCoV-2019_29_LEFT
ACTTGTGTTCCTTTTTGTTGCTGC
>nCoV-2019_29_RIGHT
AGTGTACTCTATAAGTTTTGATGGTGTGT
>nCoV-2019_2_LEFT
CTGTTTTACAGGTTCGCGACGT
>nCoV-2019_2_RIGHT
TAAGGATCAGTGCCAAGCTCGT
>nCoV-2019_30_LEFT
GCACAACTAATGGTGACTTTTTGCA
>nCoV-2019_30_RIGHT
ACCACTAGTAGATACACAAACACCAG
>nCoV-2019_31_LEFT
TTCTGAGTACTGTAGGCACGGC
>nCoV-2019_31_RIGHT
ACAGAATAAACACCAGGTAAGAATGAGT
>nCoV-2019_32_LEFT
TGGTGAATACAGTCATGTAGTTGCC
>nCoV-2019_32_RIGHT
AGCACATCACTACGCAACTTTAGA
>nCoV-2019_33_LEFT
ACTTTTGAAGAAGCTGCGCTGT
>nCoV-2019_33_RIGHT
TGGACAGTAAACTACGTCATCAAGC
>nCoV-2019_34_LEFT
TCCCATCTGGTAAAGTTGAGGGT
>nCoV-2019_34_RIGHT
AGTGAAATTGGGCCTCATAGCA
>nCoV-2019_35_LEFT
TGTTCGCATTCAACCAGGACAG
>nCoV-2019_35_RIGHT
ACTTCATAGCCACAAGGTTAAAGTCA
>nCoV-2019_36_LEFT
TTAGCTTGGTTGTACGCTGCTG
>nCoV-2019_36_RIGHT
GAACAAAGACCATTGAGTACTCTGGA
>nCoV-2019_37_LEFT
ACACACCACTGGTTGTTACTCAC
>nCoV-2019_37_RIGHT
GTCCACACTCTCCTAGCACCAT
>nCoV-2019_38_LEFT
ACTGTGTTATGTATGCATCAGCTGT
>nCoV-2019_38_RIGHT
CACCAAGAGTCAGTCTAAAGTAGCG
>nCoV-2019_39_LEFT
AGTATTGCCCTATTTTCTTCATAACTGGT
>nCoV-2019_39_RIGHT
TGTAACTGGACACATTGAGCCC
>nCoV-2019_3_LEFT
CGGTAATAAAGGAGCTGGTGGC
>nCoV-2019_3_RIGHT
AAGGTGTCTGCAATTCATAGCTCT
>nCoV-2019_40_LEFT
TGCACATCAGTAGTCTTACTCTCAGT
>nCoV-2019_40_RIGHT
CATGGCTGCATCACGGTCAAAT
>nCoV-2019_41_LEFT
GTTCCCTTCCATCATATGCAGCT
>nCoV-2019_41_RIGHT
TGGTATGACAACCATTAGTTTGGCT
>nCoV-2019_42_LEFT
TGCAAGAGATGGTTGTGTTCCC
>nCoV-2019_42_RIGHT
CCTACCTCCCTTTGTTGTGTTGT
>nCoV-2019_43_LEFT
TACGACAGATGTCTTGTGCTGC
>nCoV-2019_43_RIGHT
AGCAGCATCTACAGCAAAAGCA
>nCoV-2019_44_LEFT
TGCCACAGTACGTCTACAAGCT
>nCoV-2019_44_RIGHT
AACCTTTCCACATACCGCAGAC
>nCoV-2019_45_LEFT
TACCTACAACTTGTGCTAATGACCC
>nCoV-2019_45_RIGHT
AAATTGTTTCTTCATGTTGGTAGTTAGAGA
>nCoV-2019_46_LEFT
TGTCGCTTCCAAGAAAAGGACG
>nCoV-2019_46_RIGHT
CACGTTCACCTAAGTTGGCGTA
>nCoV-2019_47_LEFT
AGGACTGGTATGATTTTGTAGAAAACCC
>nCoV-2019_47_RIGHT
AATAACGGTCAAAGAGTTTTAACCTCTC
>nCoV-2019_48_LEFT
TGTTGACACTGACTTAACAAAGCCT
>nCoV-2019_48_RIGHT
TAGATTACCAGAAGCAGCGTGC
>nCoV-2019_49_LEFT
AGGAATTACTTGTGTATGCTGCTGA
>nCoV-2019_49_RIGHT
TGACGATGACTTGGTTAGCATTAATACA
>nCoV-2019_4_LEFT
GGTGTATACTGCTGCCGTGAAC
>nCoV-2019_4_RIGHT
CACAAGTAGTGGCACCTTCTTTAGT
>nCoV-2019_50_LEFT
GTTGATAAGTACTTTGATTGTTACGATGGT
>nCoV-2019_50_RIGHT
TAACATGTTGTGCCAACCACCA
>nCoV-2019_51_LEFT
TCAATAGCCGCCACTAGAGGAG
>nCoV-2019_51_RIGHT
AGTGCATTAACATTGGCCGTGA
>nCoV-2019_52_LEFT
CATCAGGAGATGCCACAACTGC
>nCoV-2019_52_RIGHT
GTTGAGAGCAAAATTCATGAGGTCC
>nCoV-2019_53_LEFT
AGCAAAATGTTGGACTGAGACTGA
>nCoV-2019_53_RIGHT
AGCCTCATAAAACTCAGGTTCCC
>nCoV-2019_54_LEFT
TGAGTTAACAGGACACATGTTAGACA
>nCoV-2019_54_RIGHT
AACCAAAAACTTGTCCATTAGCACA
>nCoV-2019_55_LEFT
ACTCAACTTTACTTAGGAGGTATGAGCT
>nCoV-2019_55_RIGHT
GGTGTACTCTCCTATTTGTACTTTACTGT
>nCoV-2019_56_LEFT
ACCTAGACCACCACTTAACCGA
>nCoV-2019_56_RIGHT
ACACTATGCGAGCAGAAGGGTA
>nCoV-2019_57_LEFT
ATTCTACACTCCAGGGACCACC
>nCoV-2019_57_RIGHT
GTAATTGAGCAGGGTCGCCAAT
>nCoV-2019_58_LEFT
TGATTTGAGTGTTGTCAATGCCAGA
>nCoV-2019_58_RIGHT
CTTTTCTCCAAGCAGGGTTACGT
>nCoV-2019_59_LEFT
TCACGCATGATGTTTCATCTGCA
>nCoV-2019_59_RIGHT
AAGAGTCCTGTTACATTTTCAGCTTG
>nCoV-2019_5_LEFT
TGGTGAAACTTCATGGCAGACG
>nCoV-2019_5_RIGHT
ATTGATGTTGACTTTCTCTTTTTGGAGT
>nCoV-2019_60_LEFT
TGATAGAGACCTTTATGACAAGTTGCA
>nCoV-2019_60_RIGHT
GGTACCAACAGCTTCTCTAGTAGC
>nCoV-2019_61_LEFT
TGTTTATCACCCGCGAAGAAGC
>nCoV-2019_61_RIGHT
ATCACATAGACAACAGGTGCGC
>nCoV-2019_62_LEFT
GGCACATGGCTTTGAGTTGACA
>nCoV-2019_62_RIGHT
GTTGAACCTTTCTACAAGCCGC
>nCoV-2019_63_LEFT
TGTTAAGCGTGTTGACTGGACT
>nCoV-2019_63_RIGHT
ACAAACTGCCACCATCACAACC
>nCoV-2019_64_LEFT
TCGATAGATATCCTGCTAATTCCATTGT
>nCoV-2019_64_RIGHT
AGTCTTGTAAAAGTGTTCCAGAGGT
>nCoV-2019_65_LEFT
GCTGGCTTTAGCTTGTGGGTTT
>nCoV-2019_65_RIGHT
TGTCAGTCATAGAACAAACACCAATAGT
>nCoV-2019_66_LEFT
GGGTGTGGACATTGCTGCTAAT
>nCoV-2019_66_RIGHT
TCAATTTCCATTTGACTCCTGGGT
>nCoV-2019_67_LEFT
GTTGTCCAACAATTACCTGAAACTTACT
>nCoV-2019_67_RIGHT
CAACCTTAGAAACTACAGATAAATCTTGGG
>nCoV-2019_68_LEFT
ACAGGTTCATCTAAGTGTGTGTGT
>nCoV-2019_68_RIGHT
CTCCTTTATCAGAACCAGCACCA
>nCoV-2019_69_LEFT
TGTCGCAAAATATACTCAACTGTGTCA
>nCoV-2019_69_RIGHT
TCTTTATAGCCACGGAACCTCCA
>nCoV-2019_6_LEFT
GGTGTTGTTGGAGAAGGTTCCG
>nCoV-2019_6_RIGHT
TAGCGGCCTTCTGTAAAACACG
>nCoV-2019_70_LEFT
ACAAAAGAAAATGACTCTAAAGAGGGTTT
>nCoV-2019_70_RIGHT
TGACCTTCTTTTAAAGACATAACAGCAG
>nCoV-2019_71_LEFT
ACAAATCCAATTCAGTTGTCTTCCTATTC
>nCoV-2019_71_RIGHT
TGGAAAAGAAAGGTAAGAACAAGTCCT
>nCoV-2019_72_LEFT
ACACGTGGTGTTTATTACCCTGAC
>nCoV-2019_72_RIGHT
ACTCTGAACTCACTTTCCATCCAAC
>nCoV-2019_73_LEFT
CAATTTTGTAATGATCCATTTTTGGGTGT
>nCoV-2019_73_RIGHT
CACCAGCTGTCCAACCTGAAGA
>nCoV-2019_74_LEFT
ACATCACTAGGTTTCAAACTTTACTTGC
>nCoV-2019_74_RIGHT
GCAACACAGTTGCTGATTCTCTTC
>nCoV-2019_75_LEFT
AGAGTCCAACCAACAGAATCTATTGT
>nCoV-2019_75_RIGHT
ACCACCAACCTTAGAATCAAGATTGT
>nCoV-2019_76_LEFT
AGGGCAAACTGGAAAGATTGCT
>nCoV-2019_76_RIGHT
ACACCTGTGCCTGTTAAACCAT
>nCoV-2019_77_LEFT
CCAGCAACTGTTTGTGGACCTA
>nCoV-2019_77_RIGHT
CAGCCCCTATTAAACAGCCTGC
>nCoV-2019_78_LEFT
CAACTTACTCCTACTTGGCGTGT
>nCoV-2019_78_RIGHT
TGTGTACAAAAACTGCCATATTGCA
>nCoV-2019_79_LEFT
GTGGTGATTCAACTGAATGCAGC
>nCoV-2019_79_RIGHT
CATTTCATCTGTGAGCAAAGGTGG
>nCoV-2019_7_LEFT
ATCAGAGGCTGCTCGTGTTGTA
>nCoV-2019_7_RIGHT
TGCACAGGTGACAATTTGTCCA
>nCoV-2019_80_LEFT
TTGCCTTGGTGATATTGCTGCT
>nCoV-2019_80_RIGHT
TGGAGCTAAGTTGTTTAACAAGCG
>nCoV-2019_81_LEFT
GCACTTGGAAAACTTCAAGATGTGG
>nCoV-2019_81_RIGHT
GTGAAGTTCTTTTCTTGTGCAGGG
>nCoV-2019_82_LEFT
GGGCTATCATCTTATGTCCTTCCCT
>nCoV-2019_82_RIGHT
TGCCAGAGATGTCACCTAAATCAA
>nCoV-2019_83_LEFT
TCCTTTGCAACCTGAATTAGACTCA
>nCoV-2019_83_RIGHT
TTTGACTCCTTTGAGCACTGGC
>nCoV-2019_84_LEFT
TGCTGTAGTTGTCTCAAGGGCT
>nCoV-2019_84_RIGHT
AGGTGTGAGTAAACTGTTACAAACAAC
>nCoV-2019_85_LEFT
ACTAGCACTCTCCAAGGGTGTT
>nCoV-2019_85_RIGHT
ACACAGTCTTTTACTCCAGATTCCC
>nCoV-2019_86_LEFT
TCAGGTGATGGCACAACAAGTC
>nCoV-2019_86_RIGHT
ACGAAAGCAAGAAAAAGAAGTACGC
>nCoV-2019_87_LEFT
CGACTACTAGCGTGCCTTTGTA
>nCoV-2019_87_RIGHT
ACTAGGTTCCATTGTTCAAGGAGC
>nCoV-2019_88_LEFT
CCATGGCAGATTCCAACGGTAC
>nCoV-2019_88_RIGHT
TGGTCAGAATAGTGCCATGGAGT
>nCoV-2019_89_LEFT
GTACGCGTTCCATGTGGTCATT
>nCoV-2019_89_RIGHT
ACCTGAAAGTCAACGAGATGAAACA
>nCoV-2019_8_LEFT
AGAGTTTCTTAGAGACGGTTGGGA
>nCoV-2019_8_RIGHT
GCTTCAACAGCTTCACTAGTAGGT
>nCoV-2019_90_LEFT
ACACAGACCATTCCAGTAGCAGT
>nCoV-2019_90_RIGHT
TGAAATGGTGAATTGCCCTCGT
>nCoV-2019_91_LEFT
TCACTACCAAGAGTGTGTTAGAGGT
>nCoV-2019_91_RIGHT
TTCAAGTGAGAACCAAAAGATAATAAGCA
>nCoV-2019_92_LEFT
TTTGTGCTTTTTAGCCTTTCTGCT
>nCoV-2019_92_RIGHT
AGGTTCCTGGCAATTAATTGTAAAAGG
>nCoV-2019_93_LEFT
TGAGGCTGGTTCTAAATCACCCA
>nCoV-2019_93_RIGHT
AGGTCTTCCTTGCCATGTTGAG
>nCoV-2019_94_LEFT
GGCCCCAAGGTTTACCCAATAA
>nCoV-2019_94_RIGHT
TTTGGCAATGTTGTTCCTTGAGG
>nCoV-2019_95_LEFT
TGAGGGAGCCTTGAATACACCA
>nCoV-2019_95_RIGHT
CAGTACGTTTTTGCCGAGGCTT
>nCoV-2019_96_LEFT
GCCAACAACAACAAGGCCAAAC
>nCoV-2019_96_RIGHT
TAGGCTCTGTTGGTGGGAATGT
>nCoV-2019_97_LEFT
TGGATGACAAAGATCCAAATTTCAAAGA
>nCoV-2019_97_RIGHT
ACACACTGATTAAAGATTGCTATGTGAG
>nCoV-2019_98_LEFT
AACAATTGCAACAATCCATGAGCA
>nCoV-2019_98_RIGHT
TTCTCCTAAGAAGCTATTAAAATCACATGG
>nCoV-2019_9_LEFT
TCCCACAGAAGTGTTAACAGAGGA
>nCoV-2019_9_RIGHT
ATGACAGCATCTGCCACAACAC
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