Getting started with nf-test

This repository helps you to get started with nf-test using a nextflow pipeline.

Requirements

• Install nf-test.
• Clone this repository:

git clone https://github.com/askimed/nf-test-examples

Run Tests

All included tests can be executed with a single command.

nf-test test

Run Pipeline

If you want to run the pipeline, please execute the following command:

nextflow run main.nf \
      --left $PWD/test_data/reads_1.fq.gz \
      --right $PWD/test_data/reads_2.fq.gz \
      --ref $PWD/test_data/transcriptome.fa \
      -with-docker quay.io/nextflow/rnaseq-nf:v1.0