adds codetags

averissimo · Oct 5, 2017 · 9dff63e · 9dff63e
1 parent ece12a7
commit 9dff63e
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/docs/index.md b/docs/index.md
@@ -76,11 +76,11 @@ Using makeblastdb command that comes bundled with Blast+
 
   - nucleotides database
 
-    $ makeblastdb -in &lt;filename&gt; -dbtype nucl -out "&lt;blast_db_new_name&gt;" -title "&lt;blast_db_new_name&gt;"
+    `$ makeblastdb -in &lt;filename&gt; -dbtype nucl -out "&lt;blast_db_new_name&gt;" -title "&lt;blast_db_new_name&gt;"`
 
   - protein database
 
-    $ makeblastdb -in &lt;filename&gt; -dbtype nucl -out "&lt;blast_db_new_name&gt;" -title "&lt;blast_db_new_name&gt;"
+    `$ makeblastdb -in &lt;filename&gt; -dbtype nucl -out "&lt;blast_db_new_name&gt;" -title "&lt;blast_db_new_name&gt;"`
 
 *note:* do to not use spaces in the &lt;blast db new name&gt;
 
@@ -92,19 +92,23 @@ You also need to say if it is a nucleotide or protein-based fasta file.
 
 For Linux and Mac OS X run the `import_fastas.sh` script
 
+```
     $ cd db_and_queries/import_dbs
     # for nucleotide
     $ sh import_fastas.sh nucl
     # for protein
     $ sh import_fastas.sh prot
+```
 
 For Windows run the `import_fastas.bat` script
 
+```
     $ cd db_and_queries/import_dbs
     # for nucleotide
     $ import_fastas.bat nucl
     # for protein
     $ import_fastas.bat prot
+```
 
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