could not use report.csv, as it has local path

rakefile.rb

@@ -4,6 +4,7 @@
 
 RSpec::Core::RakeTask.new(:spec) do |t|
   Rake::Task['bootstrap'].invoke
+  Rake::Task['spec:db'].invoke
   t.pattern = Dir.glob('test/test_*.rb')
   t.rspec_opts = '--format documentation'
   # t.rspec_opts << ' more options'
@@ -15,13 +16,6 @@
   # t.rspec_opts << ' more options'
 end
 
-RSpec::Core::RakeTask.new(:'spec:blast') do |t|
-  Rake::Task['bootstrap'].invoke
-  t.pattern = Dir.glob('test/test_blast.rb')
-  t.rspec_opts = '--format documentation'
-  # t.rspec_opts << ' more options'
-end
-
 task default: :bootstrap
 
 desc 'Download all external databases'

test/blast_helpers.rb

@@ -1,14 +1,17 @@
 require 'fileutils'
 #
 #
+require 'byebug'
 module BlastHelpers
   #
   # test every file in the results directory
   #  against the predicted files
   def test_results(type, output_dir)
     files = []
-    Dir.foreach(test_res_dir(type)) do |item|
-      test_file = test_res_dir(type) + File::Separator + item
+    Dir.glob(test_res_dir(type) + "/**/*") do |test_file|
+      #test_file = test_res_dir(type) + File::Separator + item
+      item = test_file.gsub(test_res_dir(type), '')
+      item = item.gsub( /^\//, '')
       next unless File.file?(test_file)
       file2 = output_dir + File::Separator + item
       files << { output: file2, expected: test_file }