Almost ready to be published

Too many changes to overview, can now test functionalities

• b054ed4 - forgot about adding folder - André Veríssimo (HEAD -> master, tag: v0.9.11, origin/master)
• c078b2a - missed byebug -_- - André Veríssimo
• d7b23a9 - could not use report.csv, as it has local path - André Veríssimo
• e638c9d - annotation dir is optional - André Veríssimo
• 8fa7e54 - wrong files copied.. oops - André Veríssimo
• c8e2206 - corrects all tests and defines bootstrap as requirement - André Veríssimo
• dddc269 - add rake to gemfile! - André Veríssimo
• 2d0245b - reduces size of testing - André Veríssimo
• c21d49a - remove byebug - André Veríssimo
• b8936c4 - removes byebug -_- - André Veríssimo
• 6d5c4a6 - add testing script - André Veríssimo
• 3f0580a - adds warning when blast returns no hits - André Veríssimo
• b004c68 - update tests - André Veríssimo
• 515ef42 - change fvesca to blackberry - André Veríssimo
• 62b0456 - validates configuration file - André Veríssimo
• 35cbe0a - update minimum codon to 120 - André Veríssimo