-
Notifications
You must be signed in to change notification settings - Fork 54
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Release v0.13.0 #456
Merged
Merged
Release v0.13.0 #456
Changes from all commits
Commits
Show all changes
14 commits
Select commit
Hold shift + click to select a range
0f509e0
release: change for V0.13.0
22d5518
update required dependency to fix scipy unit test
c496065
update unit test to fix some failures
b53cabe
update test case
6579ac5
enforce dependencies are all installed from conda-forge
9862350
update v0 template to enforce dependencies are all installed from con…
6be4a8a
address comments
64ddf78
update RELEASE.md
27c5a48
update display_name for glue pyspark
eed5f0b
update after building new images
aab4c7f
update changes
ce24837
update realease
27c3a80
update
e808b3a
update release
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,24 @@ | ||
# Change log: 0.13.0(cpu) | ||
|
||
## Upgrades: | ||
|
||
Package | Previous Version | Current Version | ||
---|---|--- | ||
python|3.8.18|3.11.9 | ||
ipython|8.12.2|8.26.0 | ||
jinja2|3.1.3|3.1.4 | ||
ipywidgets|7.8.0|7.8.3 | ||
numpy|1.24.4|1.26.4 | ||
pandas|2.0.3|2.2.2 | ||
boto3|1.34.36|1.34.151 | ||
aws-glue-sessions|1.0.4|1.0.6 | ||
keras|2.13.1|2.15.0 | ||
matplotlib|3.7.3|3.9.1 | ||
scipy|1.10.1|1.14.0 | ||
scikit-learn|1.3.2|1.5.1 | ||
pytorch|2.0.0|2.1.2 | ||
sagemaker-headless-execution-driver|0.0.12|0.0.13 | ||
sagemaker-python-sdk|2.206.0|2.227.0 | ||
sagemaker-studio-analytics-extension|0.0.21|0.1.2 | ||
tensorflow|2.13.1|2.15.0 | ||
torchvision|0.15.2|0.16.1 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,22 @@ | ||
# Change log: 0.13.0(gpu) | ||
|
||
## Upgrades: | ||
|
||
Package | Previous Version | Current Version | ||
---|---|--- | ||
python|3.8.18|3.11.9 | ||
ipython|8.12.2|8.26.0 | ||
jinja2|3.1.3|3.1.4 | ||
ipywidgets|7.8.0|7.8.3 | ||
numpy|1.24.4|1.26.4 | ||
pandas|2.0.3|2.2.2 | ||
boto3|1.34.36|1.34.151 | ||
aws-glue-sessions|1.0.4|1.0.6 | ||
keras|2.13.1|2.14.0 | ||
matplotlib|3.7.3|3.9.1 | ||
scipy|1.10.1|1.14.0 | ||
scikit-learn|1.3.2|1.5.1 | ||
sagemaker-headless-execution-driver|0.0.12|0.0.13 | ||
sagemaker-python-sdk|2.206.0|2.227.0 | ||
sagemaker-studio-analytics-extension|0.0.21|0.1.2 | ||
tensorflow|2.13.1|2.14.0 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,152 @@ | ||
ARG TAG_FOR_BASE_MICROMAMBA_IMAGE | ||
FROM mambaorg/micromamba:$TAG_FOR_BASE_MICROMAMBA_IMAGE | ||
|
||
ARG CUDA_MAJOR_MINOR_VERSION='' | ||
ARG ENV_IN_FILENAME | ||
ARG ARG_BASED_ENV_IN_FILENAME | ||
|
||
|
||
ARG NB_USER="sagemaker-user" | ||
ARG NB_UID=1000 | ||
ARG NB_GID=100 | ||
|
||
# https://www.openssl.org/source/ | ||
ARG FIPS_VALIDATED_SSL=3.0.8 | ||
|
||
ENV SAGEMAKER_LOGGING_DIR="/var/log/sagemaker/" | ||
ENV STUDIO_LOGGING_DIR="/var/log/studio/" | ||
ENV EDITOR="nano" | ||
|
||
USER root | ||
RUN usermod "--login=${NB_USER}" "--home=/home/${NB_USER}" --move-home "-u ${NB_UID}" "${MAMBA_USER}" && \ | ||
groupmod "--new-name=${NB_USER}" --non-unique "-g ${NB_GID}" "${MAMBA_USER}" && \ | ||
# Update the expected value of MAMBA_USER for the | ||
# _entrypoint.sh consistency check. | ||
echo "${NB_USER}" > "/etc/arg_mamba_user" && \ | ||
: | ||
ENV MAMBA_USER=$NB_USER | ||
ENV USER=$NB_USER | ||
|
||
RUN apt-get update && apt-get upgrade -y && \ | ||
apt-get install -y --no-install-recommends sudo gettext-base wget curl unzip git rsync build-essential openssh-client nano cron less mandoc && \ | ||
# We just install tzdata below but leave default time zone as UTC. This helps packages like Pandas to function correctly. | ||
DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends tzdata krb5-user libkrb5-dev libsasl2-dev libsasl2-modules && \ | ||
chmod g+w /etc/passwd && \ | ||
echo "ALL ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers && \ | ||
touch /etc/krb5.conf.lock && chown ${NB_USER}:${MAMBA_USER} /etc/krb5.conf* && \ | ||
# Note that we do NOT run `rm -rf /var/lib/apt/lists/*` here. If we did, anyone building on top of our images will | ||
# not be able to run any `apt-get install` commands and that would hamper customizability of the images. | ||
curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \ | ||
unzip awscliv2.zip && \ | ||
sudo ./aws/install && \ | ||
rm -rf aws awscliv2.zip && \ | ||
: | ||
RUN echo "source /usr/local/bin/_activate_current_env.sh" | tee --append /etc/profile | ||
|
||
USER $MAMBA_USER | ||
COPY --chown=$MAMBA_USER:$MAMBA_USER $ENV_IN_FILENAME *.in /tmp/ | ||
|
||
# Make sure that $ENV_IN_FILENAME has a newline at the end before the `tee` command runs. Otherwise, nasty things | ||
# will happen. | ||
RUN if [[ -z $ARG_BASED_ENV_IN_FILENAME ]] ; \ | ||
then echo 'No ARG_BASED_ENV_IN_FILENAME passed' ; \ | ||
else envsubst < /tmp/$ARG_BASED_ENV_IN_FILENAME | tee --append /tmp/$ENV_IN_FILENAME ; \ | ||
fi | ||
|
||
ARG CONDA_OVERRIDE_CUDA=$CUDA_MAJOR_MINOR_VERSION | ||
RUN micromamba install -y --name base --file /tmp/$ENV_IN_FILENAME && \ | ||
micromamba clean --all --yes --force-pkgs-dirs && \ | ||
rm -rf /tmp/*.in | ||
|
||
|
||
ARG MAMBA_DOCKERFILE_ACTIVATE=1 | ||
# Enforce dependencies are all installed from conda-forge | ||
RUN sudo ln -s $(which python3) /usr/bin/python && \ | ||
conda config --remove channels defaults && \ | ||
micromamba config append channels conda-forge --env && \ | ||
micromamba config set channel_priority strict | ||
|
||
|
||
# Install glue kernels, and move to shared directory | ||
# Also patching base kernel so Studio background code doesn't start session silently | ||
RUN install-glue-kernels && \ | ||
SITE_PACKAGES=$(pip show aws-glue-sessions | grep Location | awk '{print $2}') && \ | ||
jupyter-kernelspec install $SITE_PACKAGES/aws_glue_interactive_sessions_kernel/glue_pyspark --user && \ | ||
jupyter-kernelspec install $SITE_PACKAGES/aws_glue_interactive_sessions_kernel/glue_spark --user && \ | ||
mv /home/sagemaker-user/.local/share/jupyter/kernels/glue_pyspark /opt/conda/share/jupyter/kernels && \ | ||
mv /home/sagemaker-user/.local/share/jupyter/kernels/glue_spark /opt/conda/share/jupyter/kernels && \ | ||
sed -i '/if not store_history and (/i\ if "sm_analytics_runtime_check" in code:\n return await self._complete_cell()\n' \ | ||
"$SITE_PACKAGES/aws_glue_interactive_sessions_kernel/glue_kernel_base/BaseKernel.py" | ||
|
||
|
||
# Patch glue kernels to use kernel wrapper | ||
COPY patch_glue_pyspark.json /opt/conda/share/jupyter/kernels/glue_pyspark/kernel.json | ||
COPY patch_glue_spark.json /opt/conda/share/jupyter/kernels/glue_spark/kernel.json | ||
|
||
USER root | ||
RUN HOME_DIR="/home/${NB_USER}/licenses" \ | ||
&& mkdir -p ${HOME_DIR} \ | ||
&& curl -o ${HOME_DIR}/oss_compliance.zip https://aws-dlinfra-utilities.s3.amazonaws.com/oss_compliance.zip \ | ||
&& unzip ${HOME_DIR}/oss_compliance.zip -d ${HOME_DIR}/ \ | ||
&& cp ${HOME_DIR}/oss_compliance/test/testOSSCompliance /usr/local/bin/testOSSCompliance \ | ||
&& chmod +x /usr/local/bin/testOSSCompliance \ | ||
&& chmod +x ${HOME_DIR}/oss_compliance/generate_oss_compliance.sh \ | ||
&& ${HOME_DIR}/oss_compliance/generate_oss_compliance.sh ${HOME_DIR} python \ | ||
&& rm -rf ${HOME_DIR}/oss_compliance* | ||
|
||
|
||
# Create logging directories for Studio Analytics extension | ||
RUN mkdir -p $SAGEMAKER_LOGGING_DIR && \ | ||
chmod a+rw $SAGEMAKER_LOGGING_DIR && \ | ||
mkdir -p ${STUDIO_LOGGING_DIR} && \ | ||
chown ${NB_USER}:${MAMBA_USER} ${STUDIO_LOGGING_DIR} | ||
|
||
|
||
USER $MAMBA_USER | ||
ENV PATH="/opt/conda/bin:/opt/conda/condabin:$PATH" | ||
WORKDIR "/home/${NB_USER}" | ||
|
||
# Install FIPS Provider for OpenSSL, on top of existing OpenSSL installation | ||
# v3.0.8 is latest FIPS validated provider, so this is the one we install | ||
# But we need to run tests against the installed version. | ||
# see https://github.com/openssl/openssl/blob/master/README-FIPS.md https://www.openssl.org/source/ | ||
RUN INSTALLED_SSL=$(micromamba list | grep openssl | tr -s ' ' | cut -d ' ' -f 3 | head -n 1) && \ | ||
# download source code for installed, and FIPS validated openssl versions | ||
curl -L https://www.openssl.org/source/openssl-$FIPS_VALIDATED_SSL.tar.gz > openssl-$FIPS_VALIDATED_SSL.tar.gz && \ | ||
curl -L https://www.openssl.org/source/openssl-$INSTALLED_SSL.tar.gz > openssl-$INSTALLED_SSL.tar.gz && \ | ||
tar -xf openssl-$FIPS_VALIDATED_SSL.tar.gz && tar -xf openssl-$INSTALLED_SSL.tar.gz && cd openssl-$FIPS_VALIDATED_SSL && \ | ||
# Configure both versions to enable FIPS and build | ||
./Configure enable-fips --prefix=/opt/conda --openssldir=/opt/conda/ssl && make && \ | ||
cd ../openssl-$INSTALLED_SSL && \ | ||
./Configure enable-fips --prefix=/opt/conda --openssldir=/opt/conda/ssl && make && \ | ||
# Copy validated provider to installed version for testing | ||
cp ../openssl-$FIPS_VALIDATED_SSL/providers/fips.so providers/. && \ | ||
cp ../openssl-$FIPS_VALIDATED_SSL/providers/fipsmodule.cnf providers/. && \ | ||
make tests && cd ../openssl-$FIPS_VALIDATED_SSL && \ | ||
# After tests pass, install FIPS provider and remove source code | ||
make install_fips && cd .. && rm -rf ./openssl-* | ||
# Create new config file with fips-enabled. Then user can override OPENSSL_CONF to enable FIPS | ||
# e.g. export OPENSSL_CONF=/opt/conda/ssl/openssl-fips.cnf | ||
RUN cp /opt/conda/ssl/openssl.cnf /opt/conda/ssl/openssl-fips.cnf && \ | ||
sed -i "s:# .include fipsmodule.cnf:.include /opt/conda/ssl/fipsmodule.cnf:" /opt/conda/ssl/openssl-fips.cnf && \ | ||
sed -i 's:# fips = fips_sect:fips = fips_sect:' /opt/conda/ssl/openssl-fips.cnf | ||
ENV OPENSSL_MODULES=/opt/conda/lib64/ossl-modules/ | ||
|
||
# Install Kerberos. | ||
# Make sure no dependency is added/updated | ||
RUN pip install "krb5>=0.5.1,<0.6" && \ | ||
pip show krb5 | grep Require | xargs -i sh -c '[ $(echo {} | cut -d: -f2 | wc -w) -eq 0 ] ' | ||
|
||
# https://stackoverflow.com/questions/122327 | ||
RUN SYSTEM_PYTHON_PATH=$(python3 -c "from __future__ import print_function;import sysconfig; print(sysconfig.get_paths().get('purelib'))") && \ | ||
# Remove SparkRKernel as it's not supported \ | ||
jupyter-kernelspec remove -f -y sparkrkernel && \ | ||
# Patch Sparkmagic lib to support Custom Certificates \ | ||
# https://github.com/jupyter-incubator/sparkmagic/pull/435/files \ | ||
cp -a ${SYSTEM_PYTHON_PATH}/sagemaker_studio_analytics_extension/patches/configuration.py ${SYSTEM_PYTHON_PATH}/sparkmagic/utils/ && \ | ||
cp -a ${SYSTEM_PYTHON_PATH}/sagemaker_studio_analytics_extension/patches/reliablehttpclient.py ${SYSTEM_PYTHON_PATH}/sparkmagic/livyclientlib/reliablehttpclient.py && \ | ||
sed -i 's= "python"= "/opt/conda/bin/python"=g' /opt/conda/share/jupyter/kernels/pysparkkernel/kernel.json /opt/conda/share/jupyter/kernels/sparkkernel/kernel.json && \ | ||
sed -i 's="Spark"="SparkMagic Spark"=g' /opt/conda/share/jupyter/kernels/sparkkernel/kernel.json && \ | ||
sed -i 's="PySpark"="SparkMagic PySpark"=g' /opt/conda/share/jupyter/kernels/pysparkkernel/kernel.json | ||
|
||
ENV SHELL=/bin/bash |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,33 @@ | ||
# Release notes: 0.13.0 | ||
Upgrade Python from 3.8 to 3.11 | ||
|
||
Package | gpu| cpu | ||
---|---|--- | ||
python|3.11.9|3.11.9 | ||
ipython|8.26.0|8.26.0 | ||
jinja2|3.1.4|3.1.4 | ||
ipywidgets|7.8.3|7.8.3 | ||
numpy|1.26.4|1.26.4 | ||
pandas|2.2.2|2.2.2 | ||
boto3|1.34.151|1.34.151 | ||
aws-glue-sessions|1.0.6|1.0.6 | ||
conda|23.11.0|23.11.0 | ||
jupyterlab|3.6.7|3.6.7 | ||
keras|2.14.0|2.15.0 | ||
matplotlib|3.9.1|3.9.1 | ||
pip|23.3.2|23.3.2 | ||
scipy|1.14.0|1.14.0 | ||
scikit-learn|1.5.1|1.5.1 | ||
py-xgboost-gpu|1.7.6| | ||
thrift_sasl|0.4.3|0.4.3 | ||
pyhive|0.7.0|0.7.0 | ||
python-gssapi|1.8.3|1.8.3 | ||
pytorch-gpu|2.0.0| | ||
sagemaker-headless-execution-driver|0.0.13|0.0.13 | ||
sagemaker-kernel-wrapper|0.0.2|0.0.2 | ||
sagemaker-python-sdk|2.227.0|2.227.0 | ||
sagemaker-studio-analytics-extension|0.1.2|0.1.2 | ||
tensorflow|2.14.0|2.15.0 | ||
torchvision|0.15.2|0.16.1 | ||
py-xgboost-cpu| |1.7.6 | ||
pytorch| |2.1.2 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,27 @@ | ||
# This file is auto-generated. | ||
conda-forge::pytorch[version='>=2.0.0,<3.0.0'] | ||
conda-forge::tensorflow[version='>=2.13.1,<3.0.0'] | ||
conda-forge::python[version='>=3.11.0,<3.12.0'] | ||
conda-forge::pip[version='>=23.3.2,<24.0.0'] | ||
conda-forge::torchvision[version='>=0.15.2,<1.0.0'] | ||
conda-forge::numpy[version='>=1.24.4,<2.0.0'] | ||
conda-forge::pandas[version='>=2.0.3,<3.0.0'] | ||
conda-forge::scikit-learn[version='>=1.3.2,<2.0.0'] | ||
conda-forge::jinja2[version='>=3.1.3,<4.0.0'] | ||
conda-forge::matplotlib[version='>=3.7.3,<4.0.0'] | ||
conda-forge::sagemaker-headless-execution-driver[version='>=0.0.12,<1.0.0'] | ||
conda-forge::ipython[version='>=8.12.2,<9.0.0'] | ||
conda-forge::scipy[version='>=1.10.1,<2.0.0'] | ||
conda-forge::keras[version='>=2.13.1,<3.0.0'] | ||
conda-forge::py-xgboost-cpu[version='>=1.7.6,<2.0.0'] | ||
conda-forge::jupyterlab[version='>=3.6.7,<4.0.0'] | ||
conda-forge::ipywidgets[version='>=7.8.0,<8.0.0'] | ||
conda-forge::conda[version='>=23.11.0,<24.0.0'] | ||
conda-forge::boto3[version='>=1.34.36,<2.0.0'] | ||
conda-forge::sagemaker-python-sdk[version='>=2.206.0,<3.0.0'] | ||
conda-forge::sagemaker-studio-analytics-extension[version='>=0.0.21,<1.0.0'] | ||
conda-forge::aws-glue-sessions[version='>=1.0.4,<2.0.0'] | ||
conda-forge::sagemaker-kernel-wrapper[version='>=0.0.2,<1.0.0'] | ||
conda-forge::thrift_sasl[version='>=0.4.3,<1.0.0'] | ||
conda-forge::pyhive[version='>=0.7.0,<1.0.0'] | ||
conda-forge::python-gssapi[version='>=1.8.3,<2.0.0'] |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Can you manually leave a note that we upgraded Python from 3.8 to 3.11
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Updated