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Fix executable script wrapper for Slurm jobs #229

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merged 1 commit into from
Apr 10, 2024
Merged

Fix executable script wrapper for Slurm jobs #229

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18 changes: 8 additions & 10 deletions scripts/palace
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Original file line number Diff line number Diff line change
Expand Up @@ -146,28 +146,26 @@ else
fi

# Run parallel simulation
NODE_FILE=mpi_nodes
if [[ -n "$PBS_NODEFILE" ]]; then
# PBS/Torque job
NODE_LIST=$PBS_NODEFILE
SUBMIT_DIR=$PBS_O_WORKDIR
cat $PBS_NODEFILE | sort | uniq > $NODE_FILE
WORK_DIR=$PBS_O_WORKDIR
elif [[ -n "$SLURM_JOB_NODELIST" ]]; then
# Slurm job
NODE_LIST=$SLURM_JOB_NODELIST
SUBMIT_DIR=$SLURM_SUBMIT_DIR
scontrol show hostnames $SLURM_JOB_NODELIST > $NODE_FILE
WORK_DIR=$SLURM_SUBMIT_DIR
else
NODE_LIST=""
WORKDIR=""
WORK_DIR=""
fi
if [[ -z "$NODE_LIST" ]]; then
if [[ -z "$WORK_DIR" ]]; then
# Local execution
echo ">> $MPIRUN $PALACE $CONFIG"
$MPIRUN $PALACE $CONFIG
EXIT_CODE=$?
else
NODE_FILE=mpi_nodes
cat $NODE_LIST | sort | uniq > $NODE_FILE
echo The master node of this job is `hostname`
echo The working directory is `echo $SUBMIT_DIR`
echo The working directory is `echo $WORK_DIR`
echo This job runs on the following nodes: && cat $NODE_FILE
MPIRUN="$MPIRUN --hostfile $NODE_FILE"

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