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Tests

Tests #135

Workflow file for this run

name: Tests
on:
push:
branches:
- "main"
pull_request:
branches:
- "*"
schedule:
- cron: "0 13 * * 1"
jobs:
build:
name: Build (${{ matrix.python-version }} | ${{ matrix.os }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ["macos-latest", "ubuntu-latest", "windows-latest"]
python-version: ["3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v4
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if ci/environment.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('ci/environment-py${{ matrix.python-version }}.yml') }}
# - uses: conda-incubator/setup-miniconda@v3
# with:
# # mamba-version: "*" # activate this to build with mamba.
# python-version: ${{ matrix.python-version }}
# miniforge-variant: Mambaforge
# channels: conda-forge, defaults # These need to be specified to use mamba
# channel-priority: true
# environment-file: ci/environment-py${{ matrix.python-version }}.yml
# activate-environment: test_env_particle-tracking-manager
# use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
# - name: Set up conda environment
# shell: bash -l {0}
# run: |
# python -m pip install -e . --no-deps --force-reinstall
- name: Setup Micromamba Python ${{ matrix.python-version }}
uses: mamba-org/setup-micromamba@v1
with:
init-shell: bash
create-args: >-
python=${{ matrix.python-version }} --channel conda-forge
environment-file: ci/environment-py${{ matrix.python-version }}.yml
cache-environment: true
post-cleanup: 'all'
- name: Install package
shell: bash -l {0}
run: |
python -m pip install -e . --no-deps --force-reinstall
- name: Run Tests
shell: bash -l {0}
run: |
pytest --cov=./ --cov-report=xml
- name: Upload code coverage to Codecov
uses: codecov/codecov-action@v4
with:
file: ./coverage.xml
flags: unittests
env_vars: OS,PYTHON
name: codecov-umbrella
fail_ci_if_error: false