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Revert back to initial install
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mathieuboudreau authored Sep 19, 2024
1 parent e9995be commit 562e482
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18 changes: 3 additions & 15 deletions algos/ads_3/main.sh
Original file line number Diff line number Diff line change
Expand Up @@ -7,24 +7,12 @@ git clone https://github.com/axondeepseg/axondeepseg.git ads_v3

cd ads_v3

git checkout ads_v3_ci
git checkout 45e7da0

## prioritize 'conda-forge' channel
conda config --add channels conda-forge
conda env create -f environment.yml -n ads_v3

## update existing packages to use 'conda-forge' channel
conda update -n base --all

## install 'mamba'
conda install -n base mamba

conda update -n base -c conda-forge conda

mamba env create -f environment.yml -n ads_v3
source activate ads_v3

pip install -e .

py.test --cov AxonDeepSeg/ --cov-report term-missing

echo $PATH
py.test --cov AxonDeepSeg/ --cov-report term-missing

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