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Whole Exome Sequencing Analysis of Control and FH knockout mouse kidney cells

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Whole Exome Sequencing Analysis of Control and FH knockout mouse kidney cells

Samples

MMCID-P: Parental Control
MMCID-30B: FH knockout Clone 1
MMCID-26B: FH knockout Clone 2
TMCK1-P: Parental Control
TMCK1-14B: FH knockout Clone 1
TMCK1-23B: FH knockout Clone 2

Workflow

1: Mouse_Exome_Seq_BWA_Allignment.sh
2: Mouse_Exome_Seq_SAM_Sorting.sh
3: Mouse_Exome_Seq_Remove_Duplicates.sh
4: Mouse_Exome_Seq_Fix_Read_groups.sh
5: Mouse_Exome_Seq_Sort_BAM_files.sh
6: Mouse_Exome_Seq_INDEX_BAM_files.sh
7: Mouse_Exome_Seq_mutect2.sh
8: Mouse_Exome_Seq_filter_calls.sh
9: Mouse_Exome_Seq_Cleanup.sh
10: Mouse_Exome_Seq_VEP.sh
11: Mouse_Exome_Seq_vcf2Maf.sh

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Whole Exome Sequencing Analysis of Control and FH knockout mouse kidney cells

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