Merge pull request #47 from bcgsc/feature/include-loader-readme

Feature/include loader readme

.gitignore

@@ -6,6 +6,7 @@ dist/
 build-docs
 .vscode
 docs/_pori*
+docs/*/_pori*
 docs/*/python_adapter
 docs/developer_reference/ipr
 docs/developer_reference/graphkb

docs/build_external.sh

@@ -5,8 +5,10 @@
 if ! [ -d docs/_pori_ipr_python ];
 then
     git clone https://github.com/bcgsc/pori_ipr_python.git docs/_pori_ipr_python
+    echo "hide: true" > docs/_pori_ipr_python/.pages
 else
     cd docs/_pori_ipr_python
+    git checkout master
     git pull
     cd ../..
 fi
@@ -15,12 +17,27 @@ fi
 if ! [ -d docs/_pori_graphkb_python ];
 then
     git clone https://github.com/bcgsc/pori_graphkb_python.git docs/_pori_graphkb_python
+    echo "hide: true" > docs/_pori_graphkb_python/.pages
 else
     cd docs/_pori_graphkb_python
+    git checkout master
     git pull
     cd ../..
 fi
 
+
+# clone the loaders repo if it does not exist, otherwise update
+if ! [ -d docs/graphkb/_pori_graphkb_loader ];
+then
+    git clone https://github.com/bcgsc/pori_graphkb_loader.git docs/graphkb/_pori_graphkb_loader
+    echo "hide: true" > docs/graphkb/_pori_graphkb_loader/.pages
+else
+    cd docs/graphkb/_pori_graphkb_loader
+    git checkout master
+    git pull
+    cd ../../..
+fi
+
 # now build the reference python module API files
 markdown_refdocs \
     docs/_pori_graphkb_python/graphkb \

docs/graphkb/loading_data.md

@@ -1,36 +1,15 @@
 # Loading Data
 
 We have provided a number of modules to automate loading external resources into GraphKB. Users can
-pick and choose which resources they would like to load or use the snakemake pipeline to load them all.
-
-## Loading All Resources
-
-Loading GraphKB content can be done as an initialization step using snakemake (see instructions [here](https://github.com/bcgsc/pori_graphkb_loader#initializing-graphkb-content)). This will download and load all open-data content by default into your newly created GraphKB instance.
-
-![workflow](https://github.com/bcgsc/pori_graphkb_loader/raw/develop/docs/basic_workflow.png)
-
-## Loading Licensed Content
-
-Both COSMIC and DrugBank have some licensing on their content which will require users to create
-their own accounts with the respective resource. However, including them in the default load is trivial.
-Once you have your credentials, simply include the email/password parameters for the resource you
-would like to load as config arguments.
-
-```bash
-snakemake -j 1 \
-  --config drugbank_email="YOUR EMAIL" \
-  drugbank_password="YOUR PASSWORD" \
-  cosmic_email="YOUR EMAIL" \
-  cosmic_password="YOUR PASSWORD"
-```
+pick and choose which resources they would like to load or use the snakemake pipeline to load them all (see instructions [here](#loading-content)). This will download and load content by default into your newly created GraphKB instance.
 
 ## Popular Resources
 
 Most popular resources which have pre-built loaders provided for GraphKB are listed below. However, for an exhaustive list of all possible loaders, please see the [loader project](https://github.com/bcgsc/pori_graphkb_loader) itself.
 
 <div class='external' markdown='1'>
 
-- ![logo](data:image/png;base64,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)
+- ![cgi logo]()
 
     ### Cancer Genome Interpreter
 
@@ -81,7 +60,7 @@ Most popular resources which have pre-built loaders provided for GraphKB are lis
 
     Catalogue of Somatic Mutations in Cancer. Loaders are written for importing both the resistance mutations as well as recurrent fusions information.
 
-- ![logo](data:image/jpeg;base64,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)
+- ![cosmic logo]()
 
     ### DGIdb
 
@@ -152,13 +131,13 @@ Most popular resources which have pre-built loaders provided for GraphKB are lis
 
     Parses Oncology Approval Announcements from the FDA site, stores as evidence items.
 
-- ![logo](https://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Food_and_Drug_Administration_logo.svg/1280px-Food_and_Drug_Administration_logo.svg.png)
+- ![fda-srs logo](https://precision.fda.gov/uniisearch/_next/image?url=%2Funiisearch%2Fgsrs-logo.svg&w=256&q=75)
 
     ### FDA SRS
 
-    [https://fdasis.nlm.nih.gov/srs](https://fdasis.nlm.nih.gov/srs/)
+    [https://precision.fda.gov/uniisearch](https://precision.fda.gov/uniisearch)
 
-    The FDA substance registration system contains drug definitions and names.
+    The FDA global substance registration system contains drug definitions and names.
 
 - ![logo](../images/graph-icon_outline.svg)
 
@@ -179,6 +158,16 @@ Most popular resources which have pre-built loaders provided for GraphKB are lis
     Gene names and definitions as well as cross-mappings to several other gene resources such as
     ensembl and entrez.
 
+- ![MOA logo](https://moalmanac.org/static/img/moalmanac.jpg)
+
+    ### MOAlmanac
+
+    [https://moalmanac.org](https://moalmanac.org)
+
+    [ODbL v1.0](https://moalmanac.org/terms)
+
+    A collection of putative alteration/action relationships identified in clinical, preclinical, and inferential studies.
+
 - ![logo](https://ncit.nci.nih.gov/ncitbrowser/images/thesaurus_browser_logo.jpg)
 
     ### NCIt
@@ -189,7 +178,7 @@ Most popular resources which have pre-built loaders provided for GraphKB are lis
 
     NCI Thesaurus which contains therapies, anatomical entities, and disease definitions.
 
-- ![logo](https://www.oncokb.org/content/oncokb.png)
+- ![logo](https://avatars.githubusercontent.com/u/22530657?s=200&v=4)
 
     ### OncoKB
 
@@ -225,3 +214,10 @@ src/
 ```
 
 If you have any issues or questions please make an issue in the [loaders repo](https://github.com/bcgsc/pori_graphkb_loader/issues).
+
+## Loading Content
+
+{%
+   include-markdown "./_pori_graphkb_loader/README.md"
+   start="## Initializing GraphKB Content"
+%}