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msuchard committed Nov 9, 2024
1 parent b4e06ea commit 56f2b40
Showing 1 changed file with 86 additions and 28 deletions.
114 changes: 86 additions & 28 deletions .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -20,12 +20,13 @@ jobs:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'} # Does not appear to have Java 32-bit
- {os: windows-latest, r: 'release'}
- {os: macOS-latest, r: 'release'}
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

env:
GITHUB_PAT: ${{ secrets.GH_TOKEN }}
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}

Expand All @@ -40,45 +41,102 @@ jobs:

- uses: r-lib/actions/setup-pandoc@v2

- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Install system dependencies
- name: Install system requirements
if: runner.os == 'Linux'
run: |
sudo apt-get install -y libssh-dev
Rscript -e 'install.packages("remotes")'
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- name: Install dependencies
- uses: r-lib/actions/check-r-package@v2
with:
args: 'c("--no-manual", "--as-cran")'
build_args: 'c("--compact-vignettes=both")'
error-on: '"warning"'
check-dir: '"check"'

- name: Upload source package
if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/main'
uses: actions/upload-artifact@v4
with:
name: package_tarball
path: check/*.tar.gz

- name: Install covr
if: runner.os == 'macOS'
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
install.packages("covr")
shell: Rscript {0}

- name: Check
- name: Test coverage
if: runner.os == 'macOS'
run: covr::codecov()
shell: Rscript {0}

Release:
needs: R-CMD-Check

runs-on: macOS-latest

env:
GH_TOKEN: ${{ secrets.GH_TOKEN }}

if: ${{ github.event_name != 'pull_request' && github.ref == 'refs/heads/main' }}

steps:

- uses: actions/checkout@v3
with:
fetch-depth: 0

- name: Check if version has increased
run: |
echo "new_version="$(perl compare_versions --tag) >> $GITHUB_ENV
- name: Display new version number
if: ${{ env.new_version != '' }}
run: |
echo "${{ env.new_version }}"
- name: Create release
if: ${{ env.new_version != '' }}
uses: actions/create-release@v1
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
GITHUB_TOKEN: ${{ secrets.GH_TOKEN }}
with:
tag_name: ${{ env.new_version }}
release_name: Release ${{ env.new_version }}
body: |
See NEWS.md for release notes.
draft: false
prerelease: false

- uses: r-lib/actions/setup-r@v2
if: ${{ env.new_version != '' }}

- name: Install drat
if: ${{ env.new_version != '' }}
run: |
Sys.unsetenv("JAVA_TOOL_OPTIONS")
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch"), error_on = "warning", check_dir = "check")
install.packages('drat')
shell: Rscript {0}

- name: Upload check results
# if: failure()
uses: actions/upload-artifact@main
- name: Remove any tarballs that already exists
if: ${{ env.new_version != '' }}
run: |
rm -f *.tar.gz
- name: Download package tarball
if: ${{ env.new_version != '' }}
uses: actions/[email protected]
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
name: package_tarball

- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

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