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created a super minimal mash function for sketching sequences. #344

Merged
merged 15 commits into from
Oct 5, 2023
Merged

created a super minimal mash function for sketching sequences. #344

merged 15 commits into from
Oct 5, 2023

Commits on Sep 15, 2023

  1. created a super minimal mash function for sketching sequences.

    @TimothyStiles
    TimothyStiles committed Sep 15, 2023
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Commits on Sep 19, 2023

  1. removed cruft.

    @TimothyStiles
    TimothyStiles committed Sep 19, 2023
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Commits on Sep 23, 2023

  1. Merge branch 'main' of https://github.com/TimothyStiles/poly into min… 

    …hash-forest
    @TimothyStiles
    TimothyStiles committed Sep 23, 2023
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  2. added comments and removed cruft.

    @TimothyStiles
    TimothyStiles committed Sep 23, 2023
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Commits on Sep 29, 2023

  1. updated tl;dr for mash at the top of mash.go

    @TimothyStiles
    TimothyStiles committed Sep 29, 2023
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Commits on Oct 5, 2023

  1. cleaned up control flow for sketch method. Maybe faster?

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  2. added check to only sort sketch on insert if the hash is less than bo… 

    …th the largest and second to largest hashes.
    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  3. added comments and fixed lint issues.

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  4. fixed trailing whitespace.

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  5. added a little bit of tests and made seperate distance and similarity… 

    … methods.
    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  6. set denominator for jaccard similarity to smaller of two sketch sizes.

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  7. added comment to distance.

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  8. spoofed fingerprint test added. Test coverage 100%

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  9. fixed return value bug.

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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  10. updated package level comment.

    @TimothyStiles
    TimothyStiles committed Oct 5, 2023
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