Skip to content

DMRichR v1.7.0
Compare
Choose a tag to compare
@ben-laufer ben-laufer released this 23 Apr 01:51
· 13 commits to master since this release
v1.7.0
c139a80

New functions:

  • DMRichR::DM.R() has been parsed from the DM.R executable. The entire DMRichR pipeline can now be run as a single function directly in R. The option to use the DM.R executable through command line is still supported.
  • DMRichR::prepareHOMER() and DMRichR::HOMER() allow you to test for the enrichment of transcription factor motifs within your DMRs using HOMER. The main function will only run if HOMER is detected in your path and your genome of interest is already installed.

Improvements:

  • DMRichR now has a pkgdown website that offers improved documentation: https://ben-laufer.github.io/DMRichR/
  • GitHub actions to perform R CMD check on ubuntu, macOS, and windows.
  • DMRichR::annotateRegions() now supports annotating coordinates from analyses outside of DMRichR.

Bug fixes:

  • DMRichR::annotationDatabases() now assigns the EnsDb to the proper environment so that other functions can use it.
Assets 2
Loading