Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

update quantms-utils=0.0.12 #429

Merged
merged 40 commits into from
Oct 20, 2024
Merged

update quantms-utils=0.0.12 #429

merged 40 commits into from
Oct 20, 2024

Conversation

ypriverol
Copy link
Member

@ypriverol ypriverol commented Oct 14, 2024 •
edited
Loading

thermorawfileparser=1.4.5
quantms-utils=0.0.12

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions GitHub Actions
Copy link

github-actions bot commented Oct 18, 2024 •
edited
Loading

nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 9d69475

+| ✅ 107 tests passed       |+
#| ❔  13 tests were ignored |#
!| ❗  11 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in nextflow.config: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in README.md: Add bibliography of tools and data used in your pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in ci.yml: You can customise CI pipeline run tests as required
  • pipeline_todos - TODO string in ci.yml: You can customise CI pipeline run tests as required

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-10-20 15:21:37

@ypriverol
change schema to https
de7c4ee
@ypriverol
linting changes
9a3a724
@ypriverol
linting changes
52054b7
@ypriverol
Template update for nf-core/tools version 3.0.2
d3f0539
@ypriverol
update template 3.0.2
b30cdd6
@ypriverol
update template 3.0.2
f5cf008
@ypriverol
update template 3.0.2
66741ad
@ypriverol
update template 3.0.2
e12efa0
@ypriverol
update template 3.0.2
8c78801
@ypriverol
update template 3.0.2
bd90705
@ypriverol
update template 3.0.2
cb77002
@ypriverol
update template 3.0.2
75b2059
@ypriverol
update template 3.0.2
02c7617
@ypriverol
update template 3.0.2 - versions issues
e5fe179
@ypriverol
update template 3.0.2 - versions issues
2a01350
@ypriverol
update template 3.0.2 - versions issues
1dfd40a
@ypriverol
update template 3.0.2 - versions issues
7f288e9
@ypriverol
update template 3.0.2 - versions issues
6538c0e
@ypriverol
update template 3.0.2 - versions issues
cfebb68
@ypriverol
update template 3.0.2 - versions issues
f42e31d
@ypriverol
update template 3.0.2 - versions issues
b2875d2
@ypriverol
update template 3.0.2 - versions issues
6c7a086
@ypriverol
remove empty versions
5b7fc86
@ypriverol ypriverol merged commit 259479f into bigbio:dev Oct 20, 2024
20 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@jpfeuffer jpfeuffer jpfeuffer left review comments

@daichengxin daichengxin daichengxin approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@ypriverol @jpfeuffer @daichengxin