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Merge pull request #148 from ypriverol/conversion_bruker_data
Conversion bruker data
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@@ -5,3 +5,4 @@ pytest | |
requests | ||
pyyaml | ||
numpy | ||
defusedxml |
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@@ -1 +1 @@ | ||
__version__ = "0.0.22" | ||
__version__ = "0.0.23" |
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,18 @@ | ||
from sdrf_pipelines.openms.unimod import UnimodDatabase | ||
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def test_search_mods_by_accession(): | ||
unimod = UnimodDatabase() | ||
ptm = unimod.get_by_accession("UNIMOD:21") | ||
print(ptm.get_name()) | ||
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def test_search_mods_by_keyword(): | ||
unimod = UnimodDatabase() | ||
ptms = unimod.search_mods_by_keyword("Phospho") | ||
for ptm in ptms: | ||
print(ptm.to_str()) | ||
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if __name__ == "__main__": | ||
test_search_mods_by_keyword() |
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