some warning about numbers for technical/biological and fractions

bigbio · Jul 30, 2024 · 8f03ae2 · 8f03ae2
1 parent 67b667e
commit 8f03ae2
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/sdrf_pipelines/sdrf/sdrf.py b/sdrf_pipelines/sdrf/sdrf.py
@@ -239,6 +239,9 @@ def check_integer_columns(df, columns):
         # Specify the columns to check
         columns_to_check = ["comment[technical replicate]", "characteristics[biological replicate]", "comment[fraction identifier]"]
 
+        ## Remove columns that are not present in the dataframe
+        columns_to_check = [col for col in columns_to_check if col in self.columns]
+
         # Find rows that do not contain only integers in the specified columns
         non_integer_rows = check_integer_columns(self, columns_to_check)