Update docker-publish.yml #24
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: PoreAnalyser #PoreFinding_Ellipsoid # PoreFinding_pdb PoreFinder | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=chimeraX_pore.py | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Set execute permissions | |
| run: chmod +x PoreAnalyser/hole2/hole # PoreFinding/hole2/hole | |
| - name: Debugging Output | |
| run: | | |
| echo "ls -la /home/runner/work/PoreAnalyser/" | |
| ls -la /home/runner/work/PoreAnalyser/ | |
| echo "ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/" | |
| ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/ | |
| echo "ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/" | |
| ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/ | |
| echo "pwd" | |
| pwd | |
| echo "Current directory: $(pwd)" | |
| - name: Check Architecture Compatibility | |
| run: | | |
| file /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/hole | |
| #- name: Run hole2 | |
| # run: | | |
| # # echo "hole2/./hole" | |
| # # hole2/./hole | |
| # ./home/runner/work/PoreFinding_pdb/PoreFinding_pdb/hole2/hole | |
| - name: Test with unittest | |
| run: | | |
| python -m unittest | |
| - name: Debug Info | |
| run: | | |
| echo "Current Version: $(python -c "import PoreAnalyser as pf; print(pf.__version__)")" | |