fix: MANIFEST.in file for CHANGELOG.md (#32)

CHANGELOG.md

@@ -7,105 +7,105 @@
 
 * implementing release-please ([#30](https://www.github.com/bihealth/biomedsheets/issues/30)) ([2076440](https://www.github.com/bihealth/biomedsheets/commit/20764408458898b1f65cc550f5c1ae0514657b12))
 
-## v0.11.5
+### v0.11.5
 
 -   Fixing consistency check for Duo Cases (#26).
 
-## v0.11.4
+### v0.11.4
 
 -   Fixing issues with ResourceAdapter (#21).
 
-## v0.11.3
+### v0.11.3
 
 -   Fixing warnings in the tests (#19).
 
-## v0.11.2
+### v0.11.2
 
 -   Updating/modernizing dependencies.
 
-## v0.11.1
+### v0.11.1
 
 -   Adding property to shortcut sheets that indicates available kwargs.
 
-## v0.11.0
+### v0.11.0
 
 -   Adding custom option to join pedigrees by fields such as `familyId`.
 
-## v0.10.0
+### v0.10.0
 
 -   Adding functionality for filtering pedigrees.
 
-## v0.9.1
+### v0.9.1
 
 -   Fixing sorting bug.
 
-## v0.9.0
+### v0.9.0
 
 -   Sorting donors for picking the index in germline sample sheets.
 
-## v0.8.1
+### v0.8.1
 
 -   Fixing mapping of `Unknown` values.
 
-## v0.8.0
+### v0.8.0
 
 -   Changed behaviour in case of no affected donor has library. In this
     case, the first donor becomes the index. Consequently, the index
     must have an NGS library.
 
-## v0.7.1
+### v0.7.1
 
 -   Removing superflous print.
 
-## v0.7.0
+### v0.7.0
 
 -   Allowing to specify `bioSample` and `testSample` in germline TSV
     files.
 -   Fixing some tests.
 
-## v0.6.2
+### v0.6.2
 
 -   Proper merging with recent `ruamel.yaml` updates.
 
-## v0.6.1
+### v0.6.1
 
 -   Interpreting `#` in TSV files in more locations.
 
-## v0.6.0
+### v0.6.0
 
 -   Allowing to comment out lines in TSV files by prefixing them with
     `#`.
 
-## v0.5.6
+### v0.5.6
 
 -   Fixing bug in computing index (for real).
 
-## v0.5.5
+### v0.5.5
 
 -   Fixing bug in computing index.
 
-## v0.5.4
+### v0.5.4
 
 -   Fixing `setup.py` to work with pip v10.t
 
-## v0.5.3
+### v0.5.3
 
 -   Fixing packaging to use base and not test dependencies.
 
-## v0.5.2
+### v0.5.2
 
 -   Removing some hard (transitive) dependencies.
 
-## v0.5.1
+### v0.5.1
 
 -   Fixing manifest so the package contains the JSON file.
 
-## v0.5
+### v0.5
 
 -   Allow cancer sheets for use in germline calling.
 -   Only warn if index has no NGS library, no error.
 
-## v0.4
+### v0.4
 
 -   Fixin TSV I/O.
 -   Bumping ruamel.yaml version.
@@ -114,19 +114,19 @@
 -   Fixing `float`-related bug.
 -   Fixing bug in reference resolving (+tests)
 
-## v0.3.1
+### v0.3.1
 
 -   Fixing `setup.py` to work with pip v10.
 
-## v0.3
+### v0.3
 
 -   Adding possibility for generic TSV sample sheets.
 -   Many updates to make documentation more clear.
 -   Various updates, fixing Codacy issues.
 -   Adding routines for writing out PED file from germline sample
     sheets.
 
-## v0.2
+### v0.2
 
 -   Auto-deployment to pypi
 -   Fixing shortcuts to father/mother during cohort loading
@@ -141,7 +141,7 @@
 -   Fixing sample naming for germline sample sheets
 -   Adding versioneer integration
 
-## v0.1.1
+### v0.1.1
 
 -   First actual release, versioning done using versioneer
 -   Everything is new!

MANIFEST.in

@@ -1,9 +1,9 @@
 include AUTHORS.rst
 
 include CONTRIBUTING.rst
-include HISTORY.rst
+include CHANGELOG.md
 include LICENSE
-include README.rst
+include README.md
 
 recursive-include tests *
 recursive-exclude * __pycache__