List of Resources for Topological Data Analysis in Bioinformatics and Artificial Intelligence
- Topological Data Analysis - Annual Review of Statistics and Its Application
- Topological methods for genomics: Present and future directions
- Two-Tier Mapper
- TDA summary for gene-expression Patania, Alice, Pierluigi Selvaggi, Mattia Veronese, Ottavia DiPasquale, Paul Expert, and Giovanni Petri. "Topological gene-expression networks recapitulate brain anatomy and function." bioRxiv (2018): 476382.
- Gene Coexpression Network Comparison via Persistent Homology
- Multiple measurements TDA classifier (mmTDA) Henri Riihimäki, Wojciech Chachólski, Jakob Theorell, Jan Hillert, Ryan Ramanujam doi: https://doi.org/10.1101/569210
- TDA in preclinical spinal cord injury and traumatic brain injury
- Fast Estimation of Recombination Rates Using Topological Data Analysis
- Topological scoring of protein interaction networks
- Topological Data Analysis Generates High-Resolution, Genome-wide Maps of Human Recombination
- Inference of ancestral recombination graphs through topological data analysis
- [Spatiotemporal genomic architecture informs precision oncology in glioblastoma](https://www.nature.com/articles/ng.3806## Sec2)
- Signal enrichment with strain-level resolution in metagenomes using topological data analysis
- Conserved abundance and topological features in chromatin-remodeling protein interaction networks
- [Protein Interaction Networks](https://www.nature.com/articles/srep43845## ref18)
- Inferring the quasipotential landscape of microbial ecosystems with topological data analysis
- [tmap: topological analysis of population-scale microbiome data](doi: https://doi.org/10.1101/396960)
- WaveTDA: Bayesian Statistics, Wavelets and Topological Data Analysis to Assess Statistical Shape