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feat: Update dependencies to latest versions #972

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merged 12 commits into from
Apr 15, 2024

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@mbargull mbargull commented Mar 27, 2024

Update dependencies to their latest versions as of 2024-04-15 (apart from conda-forge-pinning and python) and adjust code accordingly.

@mbargull mbargull force-pushed the update-deps-2024-03 branch 2 times, most recently from aba99f9 to 067169f Compare March 27, 2024 19:47
We can switch to >=3.11 later, e.g., when we build for >=3.11 generally
and/or the conda-forge/linux-anvil-* base containers use python>3.10.

Signed-off-by: Marcel Bargull <[email protected]>
ruamel_yaml was only meant as a temporary workaround and we don't update
it anymore.

Signed-off-by: Marcel Bargull <[email protected]>
@mbargull mbargull changed the title [WIP] Update dependencies to latest versions feat: Update dependencies to latest versions Apr 15, 2024
jinja2=3.1.* #

anaconda-client=1.12.* # anaconda_upload
galaxy-tool-util=23.* # mulled test and container build
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Would it be OK to update galaxy-tool-util to 24.0.0 ?

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There are a few deps that got updated in the meantime; I'm looking at their changes right now.

conda info --all got deprecated in favor of --verbose.

Signed-off-by: Marcel Bargull <[email protected]>
prepopulated if referenced via "-c local" for newer conda/conda-build
versions (not sure why, TBH).

Signed-off-by: Marcel Bargull <[email protected]>
@mbargull mbargull marked this pull request as ready for review April 15, 2024 15:47
@mbargull mbargull merged commit dc6ca07 into bioconda:master Apr 15, 2024
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mbargull pushed a commit that referenced this pull request May 5, 2024
🤖 I have created a release \*beep\* \*boop\*
---
##
[2.15.0](https://www.github.com/bioconda/bioconda-utils/compare/v2.14.0...v2.15.0)
(2024-05-03)


### Features

* Add support for .conda format
([#981](https://www.github.com/bioconda/bioconda-utils/issues/981))
([125c9ea](https://www.github.com/bioconda/bioconda-utils/commit/125c9ea5e362b7e5e63dfcbfae995fa3eeb58ce8))
* choose worker recipes by depth level
([#950](https://www.github.com/bioconda/bioconda-utils/issues/950))
([4c51ae3](https://www.github.com/bioconda/bioconda-utils/commit/4c51ae31158b0154cf3ed381c4a3ad8b9bff7f14))
* Update dependencies to latest versions
([#972](https://www.github.com/bioconda/bioconda-utils/issues/972))
([dc6ca07](https://www.github.com/bioconda/bioconda-utils/commit/dc6ca07a977dfbf7cbc2d25f884dc0333d611116))
* Use conda/conda-build instead of mamba/conda-mambabuild
([#980](https://www.github.com/bioconda/bioconda-utils/issues/980))
([17cbc7f](https://www.github.com/bioconda/bioconda-utils/commit/17cbc7fb411864c7c22ff33b40682c0f43e016cc))


### Bug Fixes

* handle PR list with no items
([#975](https://www.github.com/bioconda/bioconda-utils/issues/975))
([869577a](https://www.github.com/bioconda/bioconda-utils/commit/869577a76933c2d7bcf386c1179ef454bdc18543))
* Ignore src_cache for container-built packages
([125c9ea](https://www.github.com/bioconda/bioconda-utils/commit/125c9ea5e362b7e5e63dfcbfae995fa3eeb58ce8))
* Ignore Zstandard-packed repodata artifact
([125c9ea](https://www.github.com/bioconda/bioconda-utils/commit/125c9ea5e362b7e5e63dfcbfae995fa3eeb58ce8))
* use circleci api v1.1 to avoid login error
([#982](https://www.github.com/bioconda/bioconda-utils/issues/982))
([ebafe92](https://www.github.com/bioconda/bioconda-utils/commit/ebafe92ae01dc4a573e861764a4e837bd1321af3))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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