Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[BUG] Replace dash in fasta file output of debular command #194

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

suzuki-shm
Copy link

When I used remove-chimeras-denovo command after using deblur-seqs following the pipeline proposed in supplementary figure of deblur paper, the output is missing.
As debular.log only said the error happens, I directly used vsearch command described in the script and got a message that this file is not compatible with vsearch because of invalid character of "-".
This character is removed by workflow command, but it is not by deblur-seqs.
I added the line into the function to delete the character.

@coveralls
Copy link

Coverage Status

Coverage remained the same at 88.911% when pulling a0fb6c6 on TaskeHAMANO:feature/deblur_cmd into 4b4badc on biocore:master.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants