Update micov/cli.py

Co-authored-by: Daniel McDonald <[email protected]>
biocore · Sep 4, 2024 · dba7f1c · dba7f1c
1 parent 5464f10
commit dba7f1c
Showing 1 changed file with 1 addition and 4 deletions.
diff --git a/micov/cli.py b/micov/cli.py
@@ -105,10 +105,7 @@ def compress(data, output, disable_compression, lengths, taxonomy):
             taxonomy = parse_taxonomy(taxonomy)
 
     if os.path.isdir(data):
-        file_list = glob(data + "/*.sam")
-        file_list_gz = glob(data + "/*.sam.gz")
-        file_list_xz = glob(data + "/*.sam.xz")
-        file_list = file_list + file_list_gz + file_list_xz
+        file_list = glob("data" + "/*.sam") + glob(data + '/*.sam.[xz,gz]')
 
         dfs = []
         for samfile in file_list: