Refactor to v0.3.0a1 #30
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* [TMP] script working * [TMP] update DA scripts * [TMP] Viz + LR working * Updates to workflow for multiple datasets * Fix #27 * Update GH Action * Move workflow structure * updated gh actions
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Major overhaul of pipeline architecture.
Qadabra is now a Python package that comes with command line scripts:
This allows users to run Qadabra on multiple datasets at once without having to do weird Snakemake module stuff. Also attempts to fix some dependency errors with certain tools. Notably, we pin R to 4.1.0 to make sure that corncob doesn't break. Additional misc changes included as well.
Closes #6, #25, #27, #28